PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G030496.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 332aa    MW: 36346.5 Da    PI: 6.8276
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G030496.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-182070256
                   AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                          ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a++ a+++l+g+
  HL.SW.v1.0.G030496.1 20 KFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDDAARALRGA 70
                          799******.7*********....4456*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.18E-181977No hitNo description
Gene3DG3DSA:3.30.730.103.4E-292077IPR001471AP2/ERF domain
PfamPF008471.6E-122069IPR001471AP2/ERF domain
SMARTSM003808.5E-372083IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-202078IPR016177DNA-binding domain
PROSITE profilePS5103220.3762077IPR001471AP2/ERF domain
PRINTSPR003671.0E-72132IPR001471AP2/ERF domain
PRINTSPR003671.0E-74359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MVTTGLRRKS SSSTTRGHQK FVGVRQRPSG RWVAEIKDSL QKVRLWLGTF DTAEDAARAY  60
DDAARALRGA NARTNFQLPV SSSNQDDQDH NNLEPFSFEQ VCAPTSSAAS EGFIGALKAK  120
LLDSNGEAKP TTKAAAILFP FTAKPPHQNN QYMMSNVNTA DDQLSVVLDD HNHGLGHGGQ  180
QGHDQLHGDH NSSWSGVWSS NKPPPSTIVS SHSTDNNTTH HVKAASSSSD HHHASNLSSS  240
PSALSINNNN LSIDTEEEMM MMVQYPSAIT YDKNDIHHHH HHLHHQHQEQ QFDDAATFFG  300
GSNSINSTST SSSWDPLSFS YHSPKFYSKL N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1518761271Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309564.11e-49PREDICTED: uncharacterized protein LOC101313172
TrEMBLA0A2P5F5E69e-60A0A2P5F5E6_TREOI; AP2/ERF domain containing protein
STRINGXP_004309564.14e-49(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113333035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-16related to AP2 11