PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G030667.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 62aa    MW: 7445.62 Da    PI: 7.5185
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G030667.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.2e-091361655
                          HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          ++++f+ Lrel+P++    ++K +Ka+ L + +eY+++Lq
  HL.SW.v1.0.G030667.1  1 MKKKFQILRELIPQS----DQKRDKASFLLELIEYVQYLQ 36
                          6899**********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.722135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-11157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-14156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.50E-6139No hitNo description
PfamPF000101.7E-6136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
MKKKFQILRE LIPQSDQKRD KASFLLELIE YVQYLQEKIN MYEESYQGWS SEPAKLHPWV  60
I*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278322.23e-27PREDICTED: transcription factor BIM2
RefseqXP_011653408.18e-28PREDICTED: transcription factor BIM3 isoform X3
SwissprotQ9CAA44e-24BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A2P5B2D22e-26A0A2P5B2D2_PARAD; Basic helix-loop-helix transcription factor
TrEMBLA0A2P5E9A72e-26A0A2P5E9A7_TREOI; Basic helix-loop-helix transcription factor
STRINGVIT_14s0083g00930.t013e-26(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-26BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]