PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G031293.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 252aa    MW: 28068 Da    PI: 8.4918
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G031293.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-173883147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +g+W+teEd +l  +v ++G+++W++I+r++  gR++k+c++rw + 
  HL.SW.v1.0.G031293.1 38 KGPWSTEEDRILTGLVDRYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 83
                          79*****************************9.***********985 PP
2Myb_DNA-binding52.61e-1692134347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +++  Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
  HL.SW.v1.0.G031293.1  92 PFSVAEDETILAAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 134
                           79999***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.9643388IPR017930Myb domain
SuperFamilySSF466892.49E-3035131IPR009057Homeodomain-like
SMARTSM007179.2E-143786IPR001005SANT/Myb domain
PfamPF002493.9E-163883IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-223991IPR009057Homeodomain-like
CDDcd001676.43E-134082No hitNo description
SMARTSM007179.0E-1589137IPR001005SANT/Myb domain
PROSITE profilePS5129420.3890139IPR017930Myb domain
CDDcd001671.59E-1192135No hitNo description
Gene3DG3DSA:1.10.10.605.0E-2292139IPR009057Homeodomain-like
PfamPF002499.2E-1492134IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MNYNRCSSST TSSSDSSSSE SSGNNKVPRN GNKPERIKGP WSTEEDRILT GLVDRYGPRN  60
WSLISRYIKG RSGKSCRLRW CNQLSPSVEH RPFSVAEDET ILAAHARYGN RWATIARLLP  120
GRTDNAVKNH WNSTLKRRVR EAHQMEDEGH HNHNTISCGT GFRGEPNGSL PCANTNSIMN  180
NNVNGQSPPL SLEDDPLTAL TLAPPGVGGD VMQEERRESF PAGFWDMMRD VIAREVREYV  240
STTFSENSGF R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-413413954159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-413413954159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885414.11e-106transcription factor MYB44-like
TrEMBLA0A2P5DDL41e-123A0A2P5DDL4_TREOI; MYB transcription factor
STRINGEMJ250261e-103(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50743256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.18e-56myb domain protein 73