PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G031448.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 941aa    MW: 103872 Da    PI: 5.8646
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G031448.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.4e-06540559626
                           -SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                           Cr+f+  G C+ Gd+CkF+H+
  HL.SW.v1.0.G031448.1 540 CRHFLV-GRCQEGDKCKFSHD 559
                           ******.*************7 PP
2zf-CCCH17.38.8e-06593613525
                           --SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                           +C +fa  G C++Gd+C F+H
  HL.SW.v1.0.G031448.1 593 PCTNFASRGSCSRGDNCMFSH 613
                           7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.521534561IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-5535559IPR000571Zinc finger, CCCH-type
SMARTSM003560.0024535560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4539559IPR000571Zinc finger, CCCH-type
SMARTSM003560.25563589IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.343563587IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.281588616IPR000571Zinc finger, CCCH-type
SMARTSM003560.15591615IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-6592628IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-5593614IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 941 aa     Download sequence    Send to blast
MAVEEAQIET VKASEALVQF PPHRRRHLKS ETYLTLVRIF SHCYDESQPS PSTHNLDNDL  60
KNEKGSNELG QRTDTQASQF VELVGSDNTE PEGLASEKII EVNLNVDDKC SLDSRHSQQM  120
SIDEIDQLMR IDENEDLPNQ KDASVFQEPD FGPEIMLIDE LEFIVKGNED TVHENNSKPP  180
VVSLVQNQSG IDEVVVLNNQ KELVDIKQID SKMSVNVSQK VSSLNNGVIG ESVVPRENDE  240
DRPSLLNTAV LDAGTVRQHN DREMNSVSAI ESNDSSVPII EVGKIERTEI RGEKISEDLT  300
FANTSDINNG SNDQRTGETD SLKVVHEMSL KDMKLDKSVS YGDMEDSANH MMGGVDMEEG  360
EISDGFCGDD ILMDMLLQDA VIVEGDKGNV EPITDKEEFS CNVATERDFG STFFLLDNNG  420
GMGFRESDKT KTINKPDVLI NEILLRASKV DANDALLETK NIEKTNNGGS NRVVLHGLIE  480
EDATKHHKPD NKKKRSHPTM ERRAKKKLKK QKQRAEKNRQ LGVKRLKLPV ISKPKTISYC  540
RHFLVGRCQE GDKCKFSHDT VPLTKSKPCC HFARHSCMKG DDCPFDHQLS MYPCTNFASR  600
GSCSRGDNCM FSHKIVPKED ATVASNAIEP EKKVASLMSN SKFKEQLKNN SASQQPFNVL  660
SCSTGISSHK STEKNKDETF LKQAKLVPKG INFLSVGSTP LVDSVKLKQQ ILSLNRISDA  720
KVENHLDQHG SDIVLNSKEI LKKNSPIVAP KGINFLSFGR VQQNDFSCRR LVSTPSSGND  780
SVKLSSDNSV MLNQTSSAPE SNLMLKGIQP TVSPKGINFL SFGKSSIDDS CNQGKLKLPF  840
SCDNGSDGSG KERQYPLDEQ KHSCTTSSTL PSSSVSLAQS PDPSSSRIHK ETAHSAQKAL  900
LSTLAFAAKH ESRVKQNQSI CDSSDGTEID KGVRNWALDS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1492496KKRSH
2501509RRAKKKLKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017174.10.0uncharacterized protein LOC21409920 isoform X1
TrEMBLA0A2P5BDH40.0A0A2P5BDH4_PARAD; Zinc finger, CCCH-type
STRINGXP_010090066.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66502323