PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G031799.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Protein Properties

Length: 346aa MW: 38928.8 Da PI: 9.6318

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G031799.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.3	2.9e-18	140	229	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k +++s+v + +l lp kf+e h ++k + + lede+g++++ + +k+++ l++GW+ F+ +++L++gD +vF+l++ ++ HL.SW.v1.0.G031799.1 140 FVKSMVRSHVYSCFWLGLPSKFCEYH-LPK-SVLNMELEDEDGKEYDAIY--IGKRSG--LSGGWRAFALDHKLNDGDACVFELIEPTR 222 89*******************777.343.3347***********..555544..9*********************98777 PP E..EEEEE- CS B3 90 felvvkvfr 98 f ++ ++r HL.SW.v1.0.G031799.1 223 F--KIYIVR 229 7..777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.5E-21	132	231	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.61E-23	135	232	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.35E-27	138	229	No hit	No description
Pfam	PF02362	3.4E-16	140	229	IPR003340	B3 DNA binding domain
SMART	SM01019	3.1E-27	140	231	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.633	140	231	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MTSNGDSNTY EEVRKQRLEE NKKRFEDLGI AKITKSLSDL TNSEKRSPQR HFSKPRSKIS 60 SSVEPRRSSR ARNPVQSYCD EVFVELPSSR KRSRSNPSSW ASYLARPLDE VVVASYEERT 120 AAIKAAEELE RSLKSENPTF VKSMVRSHVY SCFWLGLPSK FCEYHLPKSV LNMELEDEDG 180 KEYDAIYIGK RSGLSGGWRA FALDHKLNDG DACVFELIEP TRFKIYIVRA SMYSGEGGTT 240 MVIDEDSTEA EEKSTGKMKH GSKSKVTKKP KKLKELPTKY MIDEVEQGVS PTKTNGFVSK 300 TVKKEGESEK AGETNDAGLG QESAKCSYRR SNRKLTPKSS RHSLT*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MTSNGDSNTY EEVRKQRLEE NKKRFEDLGI AKITKSLSDL TNSEKRSPQR HFSKPRSKIS  60
SSVEPRRSSR ARNPVQSYCD EVFVELPSSR KRSRSNPSSW ASYLARPLDE VVVASYEERT  120
AAIKAAEELE RSLKSENPTF VKSMVRSHVY SCFWLGLPSK FCEYHLPKSV LNMELEDEDG  180
KEYDAIYIGK RSGLSGGWRA FALDHKLNDG DACVFELIEP TRFKIYIVRA SMYSGEGGTT  240
MVIDEDSTEA EEKSTGKMKH GSKSKVTKKP KKLKELPTKY MIDEVEQGVS PTKTNGFVSK  300
TVKKEGESEK AGETNDAGLG QESAKCSYRR SNRKLTPKSS RHSLT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010094448.1	1e-124	putative B3 domain-containing protein At5g58280
Refseq	XP_024020034.1	1e-124	putative B3 domain-containing protein At5g58280
Swissprot	Q9FHB2	3e-70	Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBL	A0A2P5DHU6	1e-169	A0A2P5DHU6_PARAD; B3 DNA binding domain containing protein
STRING	XP_010094448.1	1e-123	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12433	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	9e-70	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]