PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G031940.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 461aa    MW: 49109.7 Da    PI: 7.8325
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G031940.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.4e-20223272255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a++ a+++++g
  HL.SW.v1.0.G031940.1 223 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDDAALRFRG 272
                           7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-13223272IPR001471AP2/ERF domain
SMARTSM003801.0E-37223286IPR001471AP2/ERF domain
PROSITE profilePS5103225.699223280IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-32223281IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-22223281IPR016177DNA-binding domain
PRINTSPR003671.3E-11224235IPR001471AP2/ERF domain
CDDcd000183.00E-15231282No hitNo description
PRINTSPR003671.3E-11246262IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MCSLKVANQR TPNDASFRAQ DQGHGGGDQD RDLDQQQMNI LNQYGVVSPP HPAPSQMFSS  60
GYSSPTEMSA IVSALTHVVS GSRSRVGGGG RGDQFWGYDN RFGSGGVQVY ASPSPPNSSE  120
TTFSGVTTAS GSGSGSWSGQ KRGRDEQAAS AHRVLVDSAA ASAPTRAFRG DFKPTPAESS  180
SASATEEVTT TMSAASTAAG PVVPATPSSE AATPEESGER RRRYRGVRQR PWGKWAAEIR  240
DPHKAARVWL GTFDTAEAAA RAYDDAALRF RGNRAKLNFP ENVRSLVPPR QNFQAAPAPA  300
PTHLTIANSP ETLLAAQPNF YQATPYQGSN SDALRDYLQY SQLLQSSGDF HGQQLQQHQQ  360
MQQPPSLLEQ MIYNSQLASL QSPLMIPSSS SSAASTLFPS SVSSSASSVS HPLFFSSQVQ  420
QQPQLYFRPL PENQNPASSS DYPGPPWPNP SGYNPPPSSG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22224285668ATERF1
3gcc_A1e-22224285668ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218223ERRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044262.11e-83PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
TrEMBLA0A2P5FEK41e-141A0A2P5FEK4_TREOI; AP2/ERF transcription factor
STRINGPOPTR_0005s21690.13e-79(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-23ethylene response factor 110