PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G032012.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 309aa    MW: 34109.6 Da    PI: 5.4504
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G032012.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.4e-17956148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT++Ed +lv+ v ++G ++W+ Ia+  g++Rt+k+c++rw +yl
  HL.SW.v1.0.G032012.1  9 KGPWTEQEDFKLVCFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 56
                          79********************************************97 PP
2Myb_DNA-binding54.23.3e-1762107148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg++T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
  HL.SW.v1.0.G032012.1  62 RGKMTPQEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 107
                           89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.437456IPR017930Myb domain
SuperFamilySSF466891.91E-297103IPR009057Homeodomain-like
SMARTSM007174.4E-15858IPR001005SANT/Myb domain
PfamPF002491.7E-15956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-191063IPR009057Homeodomain-like
CDDcd001678.09E-111156No hitNo description
PROSITE profilePS5129427.33457111IPR017930Myb domain
SMARTSM007177.6E-1761109IPR001005SANT/Myb domain
PfamPF002491.3E-1562106IPR001005SANT/Myb domain
CDDcd001675.99E-1264107No hitNo description
Gene3DG3DSA:1.10.10.608.7E-2464110IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MVLQDEIRKG PWTEQEDFKL VCFVGLFGDR RWDFIAKVSG LNRTGKSCRL RWVNYLHPGL  60
KRGKMTPQEE RLVLELHSKW GNRWSRIARK LPGRTDNEIK NYWRTHMRKK AQEKKRSSTT  120
TTTTTSTSTS SSSSSPPPDV SSPSQSSSSS NITTVESLPF PDSTTGVESF YDTGGRVVSA  180
DDDGHDEKMK TEAKNHEEQQ TGAGCYSMDD IWKEISLPEV NDIGPVYGQE GVYNCNNLSS  240
APLIAAAATA AAAPSPSAWD EYYCSDSLWI NNLDEEVSKS GGFSTTTTAT NDPFNYACFD  300
YGGAFLTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-28211151159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-28211151159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112913.11e-112transcription factor MYB59
SwissprotQ9LX829e-81MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A2P5BUV31e-149A0A2P5BUV3_TREOI; MYB transcription factor
STRINGXP_010112913.11e-112(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.11e-76myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]