PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G032193.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HD-ZIP
Protein Properties Length: 237aa    MW: 26647.1 Da    PI: 8.3821
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G032193.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.9e-1979133256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           rk+ ++tkeq + Lee F+++++++ +++e LA +l+L  rqV vWFqNrRa+ k
  HL.SW.v1.0.G032193.1  79 RKKLRLTKEQSRLLEESFRQHHTLNPKQKEALALQLKLRPRQVEVWFQNRRARSK 133
                           78889************************************************98 PP
2HD-ZIP_I/II118.34.2e-3879167189
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+
  HL.SW.v1.0.G032193.1  79 RKKLRLTKEQSRLLEESFRQHHTLNPKQKEALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRS 167
                           69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.17E-1961136IPR009057Homeodomain-like
PROSITE profilePS5007116.95775135IPR001356Homeobox domain
SMARTSM003895.0E-1777139IPR001356Homeobox domain
CDDcd000861.60E-1678136No hitNo description
PfamPF000463.1E-1679133IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-1779133IPR009057Homeodomain-like
PROSITE patternPS000270110133IPR017970Homeobox, conserved site
PfamPF021831.6E-9135168IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.7E-21135178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAILPTTPSS LELTIGFSSS PSLSSSVMRD LDINQVPSVG RDHHHHHDHH DHDHNNQEDS  60
MEDEDEMMMS STTLSGPPRK KLRLTKEQSR LLEESFRQHH TLNPKQKEAL ALQLKLRPRQ  120
VEVWFQNRRA RSKLKQTEME CEYLKRWFGS LTEQNRRLQR EVEELRSMKV GPPTVISPHS  180
CEPLPASTLT MCPRCERVTT STTSAVAGNH NMPGPTRTGA ASTAVALSSK VTTPSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127135RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024024875.11e-110homeobox-leucine zipper protein HOX3
SwissprotQ0JKX17e-78HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH387e-78HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A2P5FK791e-109A0A2P5FK79_TREOI; Octamer-binding transcription factor
STRINGEMJ251171e-108(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95063040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.16e-61homeobox-leucine zipper protein 17