PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G032236.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 89aa    MW: 10127.6 Da    PI: 10.2206
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G032236.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding66.26.1e-211461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEde+lvd+++++G g+W++ ++  g++R++k+c++rw +yl
  HL.SW.v1.0.G032236.1 14 KGPWTPEEDEKLVDYIRRHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                          79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-26664IPR009057Homeodomain-like
PROSITE profilePS5129425.191965IPR017930Myb domain
SMARTSM007179.7E-161363IPR001005SANT/Myb domain
PfamPF002494.0E-191461IPR001005SANT/Myb domain
SuperFamilySSF466893.91E-251588IPR009057Homeodomain-like
CDDcd001675.84E-121661No hitNo description
Gene3DG3DSA:1.10.10.601.5E-86588IPR009057Homeodomain-like
PROSITE profilePS512947.9146688IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MGRSPSSDEN GLKKGPWTPE EDEKLVDYIR RHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEDEEKLIIN LHAVLGNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-181288580B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087464.21e-57transcription factor MYB41
SwissprotQ9SBF37e-52MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A2P5BL543e-56A0A2P5BL54_TREOI; MYB transcription factor
TrEMBLW9QDG23e-56W9QDG2_9ROSA; Transcription factor
STRINGXP_010087464.15e-57(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.13e-54myb domain protein 92
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]