PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G032289.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

C3H

Protein Properties

Length: 385aa MW: 42715.9 Da PI: 7.7183

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G032289.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.3e-08	137	157	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G C+ Gd+C FaHg HL.SW.v1.0.G032289.1 137 ACPEFRK-GNCRNGDSCEFAHG 157 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.2E-5	130	159	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.7E-5	132	158	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.46	133	159	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.8E-6	137	157	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	19	167	190	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.503	167	191	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MMIGEQNRLK PTVQIPQWDP YEDPTAGLSS PLSLNSPSVN HNSNVGTGDF YHFLEKFSSL 60 HRYLPSNEFL HGESDSLSEE LDVHVDSFSC DHFRMFEFKV RRCGRSRSHD WTECPFAHPG 120 EKARRRDPRK HHYSGTACPE FRKGNCRNGD SCEFAHGVFE CWLHPARYRT QPCKDGLSCR 180 RRVCFFAHTA EQLRVLAQQS PRTNGPCESY DGSPIRHTFD SYLTKGAFLS SPTSILTSPP 240 LSPPSDSPPA SPNSLQIGGG TINSSSELLT SMRNLHLGKI KMSSSAPWGF QMGSGFISPR 300 GGSMLRPGFC SVPSTPTRNP ITPLLGSMDP WEQTFEEEPK MERVESGKNI RAIMYAKLSK 360 ENSLGRGDSA AAAPDVGWIS ELVN*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MMIGEQNRLK PTVQIPQWDP YEDPTAGLSS PLSLNSPSVN HNSNVGTGDF YHFLEKFSSL  60
HRYLPSNEFL HGESDSLSEE LDVHVDSFSC DHFRMFEFKV RRCGRSRSHD WTECPFAHPG  120
EKARRRDPRK HHYSGTACPE FRKGNCRNGD SCEFAHGVFE CWLHPARYRT QPCKDGLSCR  180
RRVCFFAHTA EQLRVLAQQS PRTNGPCESY DGSPIRHTFD SYLTKGAFLS SPTSILTSPP  240
LSPPSDSPPA SPNSLQIGGG TINSSSELLT SMRNLHLGKI KMSSSAPWGF QMGSGFISPR  300
GGSMLRPGFC SVPSTPTRNP ITPLLGSMDP WEQTFEEEPK MERVESGKNI RAIMYAKLSK  360
ENSLGRGDSA AAAPDVGWIS ELVN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015885103.1	0.0	zinc finger CCCH domain-containing protein 23
Swissprot	Q9M0G2	1e-111	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	A0A2P5EKZ2	0.0	A0A2P5EKZ2_TREOI; Zinc finger, CCCH-type
STRING	VIT_04s0008g00610.t01	1e-173	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2056	31	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-111	C3H family protein

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]