PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G032469.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 210aa    MW: 23075.8 Da    PI: 9.9849
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G032469.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.59.6e-22145196359
                           -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           D y+WrKYGqK+ kgs++p      + +gCp++k+ver+ +d +++++tYegeHnh+
  HL.SW.v1.0.G032469.1 145 DNYSWRKYGQKPTKGSPHPS-----SVRGCPARKHVERALDDSSMLVVTYEGEHNHS 196
                           9******************7.....589****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.3E-1695140IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.2E-23131196IPR003657WRKY domain
PROSITE profilePS5081122.366138198IPR003657WRKY domain
SuperFamilySSF1182904.18E-19141196IPR003657WRKY domain
SMARTSM007747.7E-26143197IPR003657WRKY domain
PfamPF031063.0E-17145195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
TYDQNVVVIP ITVVIERKDK DHSSSSTNTT INFSSYSTAA TTASFLSSLT GDSDTKLHHH  60
HNHHQPLSSS PGFQITNLSQ VSSVGKPPIS TSSLKRRCSF ENLGSDKCDS DSSGRCRCSK  120
KRKLRLKRVV RVPAISLKMA NIPPDNYSWR KYGQKPTKGS PHPSSVRGCP ARKHVERALD  180
DSSMLVVTYE GEHNHSLSVA ETSNLILESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-16131197273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2297381e-32KP229738.1 UNVERIFIED: Boehmeria nivea WRKY transcription factor-like (WRKY09) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007205552.11e-93probable WRKY transcription factor 7
SwissprotO221761e-58WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLA0A2P5D1L72e-95A0A2P5D1L7_TREOI; WRKY domain containing protein
STRINGEMJ067514e-93(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.13e-44WRKY DNA-binding protein 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]