PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G032472.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

HD-ZIP

Protein Properties

Length: 90aa MW: 10493.8 Da PI: 7.5402

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G032472.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.7	4.2e-18	3	52	7	56
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++eq + L + Fe+++++ e++ +LA++lg++ rqV vWFqNrRa+ k HL.SW.v1.0.G032472.1 3 LSEEQANFLARNFESEQKLAPERKDRLASELGIDPRQVAVWFQNRRARLK 52 789*********************************************98 PP
2	HD-ZIP_I/II	106.5	2e-34	2	85	5	88
HD-ZIP_I/II 5 rlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 rls+eq+++L ++Fe+e+kL perK +la+eLg++prqvavWFqnrRAR k+ +lE++y++Lk+ ++l+++++rLe+ev++L HL.SW.v1.0.G032472.1 2 RLSEEQANFLARNFESEQKLAPERKDRLASELGIDPRQVAVWFQNRRARLKAEKLEEEYSSLKKVNESLVNDQRRLESEVHSLS 85 9********************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.018	1	54	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.9E-19	2	55	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.42E-16	2	62	IPR009057	Homeodomain-like
CDD	cd00086	7.85E-11	2	52	No hit	No description
SMART	SM00389	7.8E-10	2	58	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-15	3	52	IPR001356	Homeobox domain
PRINTS	PR00031	7.5E-6	25	34	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	29	52	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.5E-6	34	50	IPR000047	Helix-turn-helix motif
Gene3D	G3DSA:1.20.5.170	9.5E-4	56	87	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MRLSEEQANF LARNFESEQK LAPERKDRLA SELGIDPRQV AVWFQNRRAR LKAEKLEEEY 60 SSLKKVNESL VNDQRRLESE VHSLSSLYT*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028775618.1	2e-30	homeobox-leucine zipper protein ATHB-40
Swissprot	O23208	3e-27	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A0V0I7D1	7e-29	A0A0V0I7D1_SOLCH; Putative ovule protein
TrEMBL	A0A1S2YYP5	1e-28	A0A1S2YYP5_CICAR; homeobox-leucine zipper protein ATHB-40
STRING	XP_004512013.1	2e-29	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4789	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	1e-21	homeobox protein 40

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]