PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G032482.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family SBP
Protein Properties Length: 818aa    MW: 91055.2 Da    PI: 6.6282
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G032482.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP115.92.2e-36156231176
                           --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                   SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                           +Cqv++C +d++e+k yhrrh+vC  +++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L+khn+rrr+k
  HL.SW.v1.0.G032482.1 156 RCQVPDCGVDIKELKGYHRRHRVCLRCANATTVTIDGETKRYCQQCGKFHVLADFDEGKRSCRRKLEKHNNRRRRK 231
                           6***********************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.9E-28150218IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.017154231IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-33155233IPR004333Transcription factor, SBP-box
PfamPF031104.0E-27157231IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MEGAGSPSSS QSQPQGSDQL EMEVAHAPSL HDDGSNIWDW GDLLDFTVDD GDLAINWASN  60
PARQQAQTTG VEQQQLLVPP TTTATATTAG EEEGNNSDPG RVRKRDPRMV CSNFLAGLVP  120
CACPEMDEKL MELEEEEAGH GKKRARTVRA SSGVARCQVP DCGVDIKELK GYHRRHRVCL  180
RCANATTVTI DGETKRYCQQ CGKFHVLADF DEGKRSCRRK LEKHNNRRRR KPAGSKGANE  240
KESQGDIPSE DVSGDGEAGK DCSQFSSQRL QKETFVESED GLISPLRSGP DSKDGNSDGF  300
LSLVDSGENQ MEGGKDNSKC GVSPSYWDNK SAYTSMCPSG RISFKLYDWN PAEFPRRLRH  360
QIFQWLSNMP VELEGYIRPG CIILTVFVAM PRFMWMKLFE DPKSYVHDFV ATPGGMLSGR  420
GNILVYLNNM MFYVVKDGTS VIKAKVDVLA PKLHYVHPTC FEAGKPMEFV ACGSNLLQPK  480
LKFLLSFSGK YMTCDYSPAS SHSLTDGNSA CGFDHQLYRI RVPHTETDCF GPVFIEVENE  540
AGLSNFIPLL IGDKETCSEM KVIQQRHDES HFSERPYFTS IGSPSNLCEV SSQRQRAFSE  600
IILDIGWLLR KPGSENSQPI VTNSQIQRLN YLLSFLVSIE SFKILEKILE NLRIVINKME  660
SNGSCNGINE ADLKLLKKYM DYAHQLRSQK PQEAVNLDLN SRNSMLQEDH DMEIMVNSKS  720
GIMEDSTYNK GSETISLLNR ETVLKPNLKK EWPSDSVCLV SSGEVLSSRR RAFLGFRPTL  780
LVIATAAVCL GICSVLFHPQ KVSGFAISIR RCLLNKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A1e-40154237386squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217229RRKLEKHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027509.10.0squamosa promoter-binding-like protein 7
TrEMBLA0A2P5E3Z40.0A0A2P5E3Z4_PARAD; SBP-box transcription factor
STRINGXP_010105670.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64703450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.20.0squamosa promoter binding protein-like 7