PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G032600.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Dof

Protein Properties

Length: 509aa MW: 55432.2 Da PI: 6.1403

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G032600.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.6e-39	135	195	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s HL.SW.v1.0.G032600.1 135 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNSA 195 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-31	132	192	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.8E-32	137	193	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.733	139	193	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	141	177	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MRAEMSEAKD PAIKLFGKTI PVAEVPGISG GSQGPSVSAC ATSVDDNTDQ EPASKPNSSS 60 EVNTSKDEED RETEKETAKG NPTETKEEDG NQPMSPEEPR NSDATSGISE NPKASKTEEE 120 QSEGTNSQEK TLKKPDKILP CPRCNSMDTK FCYYNNYNVN QPRHFCKKCQ RYWTAGGTMR 180 NVPVGAGRRK NKNSASHYRH ITVSEALQNA RTDVSTGVHS PHPAMKSNAT VLTFGSDAPL 240 CESMASVLNL ADKTMRNCTQ NGFHKPEELR TGFQKPEEVR TPVPYGSVES GDNNVDGSSV 300 TTSNSKDEAC KNVSQEQVIQ NSQGVPPQMP CFPGPPWPYP WNAAQWNPSV PMPAFCPPGY 360 PMPFYPAAAY WGCNVPGTWN IPWLPLPTSP NPVAPSSGPN SPTLGKHSRD ENTVKPNSSE 420 EEQPKESSSE RYLWIPKTLR IDDPGEAARS SIWATLGIKN DKADSISGGG LFKAFQPKND 480 EKNRRAEHSV LQANPAALSR SLSFQERS*

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MRAEMSEAKD PAIKLFGKTI PVAEVPGISG GSQGPSVSAC ATSVDDNTDQ EPASKPNSSS  60
EVNTSKDEED RETEKETAKG NPTETKEEDG NQPMSPEEPR NSDATSGISE NPKASKTEEE  120
QSEGTNSQEK TLKKPDKILP CPRCNSMDTK FCYYNNYNVN QPRHFCKKCQ RYWTAGGTMR  180
NVPVGAGRRK NKNSASHYRH ITVSEALQNA RTDVSTGVHS PHPAMKSNAT VLTFGSDAPL  240
CESMASVLNL ADKTMRNCTQ NGFHKPEELR TGFQKPEEVR TPVPYGSVES GDNNVDGSSV  300
TTSNSKDEAC KNVSQEQVIQ NSQGVPPQMP CFPGPPWPYP WNAAQWNPSV PMPAFCPPGY  360
PMPFYPAAAY WGCNVPGTWN IPWLPLPTSP NPVAPSSGPN SPTLGKHSRD ENTVKPNSSE  420
EEQPKESSSE RYLWIPKTLR IDDPGEAARS SIWATLGIKN DKADSISGGG LFKAFQPKND  480
EKNRRAEHSV LQANPAALSR SLSFQERS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010088142.1	0.0	cyclic dof factor 2
TrEMBL	A0A2P5FF12	0.0	A0A2P5FF12_TREOI; Zinc finger, Dof-type
STRING	XP_010088142.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-107	cycling DOF factor 2