PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G032739.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family CPP
Protein Properties Length: 617aa    MW: 66059.3 Da    PI: 7.0308
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G032739.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.94.7e-14116155242
                   TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                           ++k+CnC++s+Clk+YCeCfa+g +C+  C+C +C N+ e+
  HL.SW.v1.0.G032739.1 116 KQKQCNCRHSRCLKLYCECFASGIYCDG-CNCVNCYNNVEN 155
                           89**************************.********9875 PP
2TCR50.83.2e-16200239140
                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                           k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  HL.SW.v1.0.G032739.1 200 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 239
                           589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.9E-16115155IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.946116240IPR005172CRC domain
PfamPF036386.1E-11117152IPR005172CRC domain
SMARTSM011148.4E-20200241IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12203238IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MGGGEEGDLP PKKLQSDGAG GSGTALSDAP TKKLARQLDF TGYGGASGGV VLPEHHQSQP  60
VLPLQPQPVV QSQPQPQVVA GPVMPQPSVP SARIVKPDSP KSRSRPNEVK DGTPKKQKQC  120
NCRHSRCLKL YCECFASGIY CDGCNCVNCY NNVENEAARR EAVEATLERN PNAFRPKIAS  180
SPHGVRDNRE DAGEVMILGK HNKGCHCKKS GCLKKYCECF QANILCSENC KCMDCKNFEG  240
SEERQALFHG DHGSNIAYIQ QAANAAITGA IGSSGYTSPP VSKKRKGQEL FFGPTVTPKD  300
TSVNRIGQFQ QASHHRAPAP PSLPSVPAAR LGGATGVGPS KFTYRSLLAD IIQPQDLKEL  360
CSVLVVLSGE AAKTIADQRS ATEKRTEDQS ETSLASTTQD RLQSQKESDL EKSVVDDCSS  420
ANQADKTGAD DSSSDGADLP KGRPMSPDTL ALMCDEQDTM FMASASPSGT GHGCNVSSQL  480
PYEQGMLEVY AEQERIVLSK FRDCLKMLIA LGEIKGKYFQ NFMDLSVETK YSSLAQSEPE  540
SQKDTLTNGI ANARTEISFH QGPANIGVSK TIVPPTAKTT QMISTAAVAA VSSDLPKIPQ  600
FPENGWIANP KTEKEM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-311082492132Protein lin-54 homolog
5fd3_B1e-311082492132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026990.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2P5FSX70.0A0A2P5FSX7_TREOI; Lin-54-like protein
STRINGXP_010105053.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-152Tesmin/TSO1-like CXC domain-containing protein