PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G032767.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

NAC

Protein Properties

Length: 378aa MW: 42801.8 Da PI: 4.9186

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G032767.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	92.3	7.8e-29	5	121	5	127
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdk 90 fr +Ptd e++ +Lk k++g + el++ i+e++++k+eP++Lp k kvk++ kew+f ++ d k ++ +k+ +r+tk+gyWk tg+++ HL.SW.v1.0.G032767.1 5 FRLKPTDAEII-AHLKLKTRGMESELDHYIAEINVCKWEPSELPsKsKVKSDIKEWWFLCRLDYKCSKsSKQVKRSTKTGYWKRTGEER 92 99*******.89********888**********95358888889*******9973567788********99 PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127 + + vg+k+ Lvfy+gr+ +tdWv+hey HL.SW.v1.0.G032767.1 93 KTKG----CVGMKRNLVFYRGRK----RTDWVIHEYY 121 8866....8******7765....78*****6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	30.615	1	144	IPR003441	NAC domain
Pfam	PF02365	1.9E-16	4	120	IPR003441	NAC domain
SuperFamily	SSF101941	2.62E-27	5	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MSKYFRLKPT DAEIIAHLKL KTRGMESELD HYIAEINVCK WEPSELPSKS KVKSDIKEWW 60 FLCRLDYKCS KSSKQVKRST KTGYWKRTGE ERKTKGCVGM KRNLVFYRGR KRTDWVIHEY 120 YYPQPHVKLQ DQKPTCVICR LMHDPQRKGR NSDAPDLEEG EQSGNITTDL ENSVAPAVTL 180 GGHGHGEVNH QPVSPMLSPD ANFVEQSLGL MLDNDMQVPC GENFEISGNT TYFPQNPLAV 240 GDISPSVQWD DGISLSDLKN PLPSFASPAD HCHDEVNSQH FSPLYSPESN FMEPTLSFLL 300 DEEMQAPSGA ADDSNEYFKE LPDLSAVTPV ENDYLYNTSS VQPLPIWSYL DGQFTSDTHT 360 EEVNEQVEVH VHWPLDG*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MSKYFRLKPT DAEIIAHLKL KTRGMESELD HYIAEINVCK WEPSELPSKS KVKSDIKEWW  60
FLCRLDYKCS KSSKQVKRST KTGYWKRTGE ERKTKGCVGM KRNLVFYRGR KRTDWVIHEY  120
YYPQPHVKLQ DQKPTCVICR LMHDPQRKGR NSDAPDLEEG EQSGNITTDL ENSVAPAVTL  180
GGHGHGEVNH QPVSPMLSPD ANFVEQSLGL MLDNDMQVPC GENFEISGNT TYFPQNPLAV  240
GDISPSVQWD DGISLSDLKN PLPSFASPAD HCHDEVNSQH FSPLYSPESN FMEPTLSFLL  300
DEEMQAPSGA ADDSNEYFKE LPDLSAVTPV ENDYLYNTSS VQPLPIWSYL DGQFTSDTHT  360
EEVNEQVEVH VHWPLDG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-13	5	141	21	162	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-13	5	141	21	162	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-13	5	141	21	162	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-13	5	141	21	162	NO APICAL MERISTEM PROTEIN
3swm_A	2e-13	5	141	24	165	NAC domain-containing protein 19
3swm_B	2e-13	5	141	24	165	NAC domain-containing protein 19
3swm_C	2e-13	5	141	24	165	NAC domain-containing protein 19
3swm_D	2e-13	5	141	24	165	NAC domain-containing protein 19
3swp_A	2e-13	5	141	24	165	NAC domain-containing protein 19
3swp_B	2e-13	5	141	24	165	NAC domain-containing protein 19
3swp_C	2e-13	5	141	24	165	NAC domain-containing protein 19
3swp_D	2e-13	5	141	24	165	NAC domain-containing protein 19
4dul_A	1e-13	5	141	21	162	NAC domain-containing protein 19
4dul_B	1e-13	5	141	21	162	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P5FH96	3e-73	A0A2P5FH96_TREOI; NAC domain containing protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF25570	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.3	4e-31	NAC transcription factor-like 9