PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G032839.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 390aa MW: 44297.9 Da PI: 9.4288

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G032839.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.9	3.2e-08	51	103	47	90
FAR1 47 k........tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 k t++ +++ a trtgC a l v++++ d++w+ ++++ HnH+la HL.SW.v1.0.G032839.1 51 KmfaatnpiTQSGKENGAITRTGCLALLWVNLDRsDNTWVAKDFNPVHNHDLA 103 355666677789999***************999**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-5	51	103	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.6E-33	211	304	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
GFKIKKTRKI WKIRKNYQKK TSYTNSFIPF KNGKIFITCT LNGWGLVLEK KMFAATNPIT 60 QSGKENGAIT RTGCLALLWV NLDRSDNTWV AKDFNPVHNH DLATKTELQF LRSNRGVPDC 120 VGAQVISMRR SSICTRHILN HLARERGGRE GQEVKEGETD VEGALGYLEC LGLCELDSYE 180 THTIDKEYRL ADLFWADGNC RRDYNLFGEI MAFDTTYRKN AYNKPLLIFV GVNHHFRTIV 240 FAVALLYDET EETYIWVLQE FLECMKNKAP HVIVTDGDHA MANTIKVVMP QLVHRLCVWH 300 LQANISSNAP HPVFKEKFNE LFISIVLRNS SRIHGTIWSP NSIFKKVAGQ KELLTTVNVG 360 PSVSSRETSS RVLQPPKGMS QSIPTYHTS*

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

GFKIKKTRKI WKIRKNYQKK TSYTNSFIPF KNGKIFITCT LNGWGLVLEK KMFAATNPIT  60
QSGKENGAIT RTGCLALLWV NLDRSDNTWV AKDFNPVHNH DLATKTELQF LRSNRGVPDC  120
VGAQVISMRR SSICTRHILN HLARERGGRE GQEVKEGETD VEGALGYLEC LGLCELDSYE  180
THTIDKEYRL ADLFWADGNC RRDYNLFGEI MAFDTTYRKN AYNKPLLIFV GVNHHFRTIV  240
FAVALLYDET EETYIWVLQE FLECMKNKAP HVIVTDGDHA MANTIKVVMP QLVHRLCVWH  300
LQANISSNAP HPVFKEKFNE LFISIVLRNS SRIHGTIWSP NSIFKKVAGQ KELLTTVNVG  360
PSVSSRETSS RVLQPPKGMS QSIPTYHTS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3265	7	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-31	FAR1-related sequence 5