PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G032937.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Nin-like

Protein Properties

Length: 340aa MW: 39066.9 Da PI: 10.1611

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G032937.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.8	1.7e-26	212	261	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i l+dl+kyF+lpi +A+++L+v+lTvLK++CR++GI+RWPhRkiksl HL.SW.v1.0.G032937.1 212 ARIALSDLAKYFDLPIVEASRNLKVGLTVLKKKCREFGIPRWPHRKIKSL 261 6899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.883	197	282	IPR003035	RWP-RK domain
Pfam	PF02042	2.1E-21	214	261	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MDSSSKTHFL ISLLIFKNTL NRELIRSLHA YRWSDGKESE VEREFVFSTN GTYNEMEANP 60 LLLGLTDCRV SDVSKGLVNG LWVCIFAFHN HHPHFPHLTS IPSLLTPSKN PKLRSIPSLA 120 NDLQAIFQMK CMTTFTDDKE SLQLDLPSNE NENQPPKRRN LVLYQDLNCL PYPDTPSQSS 180 DDQRMDQSSP SSGGVDEKKK LKKKRAASKD IARIALSDLA KYFDLPIVEA SRNLKVGLTV 240 LKKKCREFGI PRWPHRKIKS LDSLIRDLQV EKKWKEENKA AAIAAAKRKM MLQNEKESIE 300 KTPFLEMKTE TKRFRQDVFK RRHRDRVLRT QQASSITQD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024025777.1	1e-143	protein RKD5
TrEMBL	A0A2P5BMN4	1e-155	A0A2P5BMN4_PARAD; RWP-RK domain containing protein
STRING	XP_010103258.1	1e-137	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9646	30	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	7e-75	RWP-RK domain-containing protein