PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G033241.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 124aa    MW: 13469.2 Da    PI: 11.0017
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G033241.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-204796154
                   AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54
                          s+++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa+a++ a+++l+
  HL.SW.v1.0.G033241.1 47 SHFRGVRKRP-WGRFAAEIRDpWK----KTRKWLGTFDTAEEAARAYDDAARSLR 96
                          78********.**********883....5***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.84E-164783No hitNo description
PfamPF008471.0E-124796IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-184796IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.0E-264897IPR001471AP2/ERF domain
SMARTSM003802.0E-2348120IPR001471AP2/ERF domain
PROSITE profilePS5103219.7748108IPR001471AP2/ERF domain
PRINTSPR003671.3E-104960IPR001471AP2/ERF domain
PRINTSPR003671.3E-107187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MAVDTLRLRK NSLNSSAGAS AEPRPLAPSP PSPNESQQFR VPALKESHFR GVRKRPWGRF  60
AAEIRDPWKK TRKWLGTFDT AEEAARAYDD AARSLRVMET AGVLAQRDAV IGAGEIGVQG  120
IQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1749961563Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023747.11e-35ethylene-responsive transcription factor 8
TrEMBLA0A1U8BA864e-32A0A1U8BA86_NELNU; ethylene-responsive transcription factor 9-like
STRINGXP_010278126.17e-33(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-19ERF domain protein 12