PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G033553.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 339aa    MW: 37856.6 Da    PI: 4.6271
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G033553.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.23.2e-21109159155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           ++++GVr+++ +grW+AeIrdps    r +r++lg+f+tae+Aa ++++a+ +l+g
  HL.SW.v1.0.G033553.1 109 PKFRGVRRRP-WGRWAAEIRDPS----RrTRVWLGTFDTAEQAALMYDEAAIRLKG 159
                           79********.**********84....34************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.14E-30109166No hitNo description
PfamPF008474.2E-15109159IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-20110168IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-29110166IPR001471AP2/ERF domain
PROSITE profilePS5103223.143110167IPR001471AP2/ERF domain
SMARTSM003806.9E-34110173IPR001471AP2/ERF domain
PRINTSPR003673.9E-10111122IPR001471AP2/ERF domain
PRINTSPR003673.9E-10133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDSVKFSEHR TVTVVKSSQS KKHDFRVVRI HVTDDDATDS SSGEDEDCRE SSVAVLRVKR  60
HVSEVRFEEY CPNSRPEVRN SKLKPANRSG ARACKSTAAA TELYFPNGPK FRGVRRRPWG  120
RWAAEIRDPS RRTRVWLGTF DTAEQAALMY DEAAIRLKGP GAQTNFGFDP RREPSNPVVV  180
VEDHDHDHRD AVGMGFSGYD SGKESQALSS PTSVLRFQNP LDQSNPECTD SCTPIAPTPT  240
TTKNSTDRSS YCTPAEPQLG LYPADSEWCF EDDFSFLDSP ILSDDCLYEE GAPPLFVDDQ  300
VHYVPEKIPA EEDDFGGVLA DLDGDFGSCK WDVDQYYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-18108166362ATERF1
3gcc_A1e-18108166362ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109447.17e-75pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A2P5E8G45e-97A0A2P5E8G4_TREOI; AP2/ERF transcription factor
STRINGXP_010109447.13e-74(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.18e-44cytokinin response factor 4