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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | HL.SW.v1.0.G033762.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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| Family | bZIP | ||||||||
| Protein Properties | Length: 173aa MW: 19682.9 Da PI: 10.3661 | ||||||||
| Description | bZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | bZIP_1 | 31.8 | 3.1e-10 | 85 | 126 | 10 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51
NR +A rs +RK +i+eL++kv++L++e ++L +l
HL.SW.v1.0.G033762.1 85 ILANRQSAARSKERKARYIQELKQKVQTLQTEATTLSAQLTL 126
567*********************************988866 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00338 | 3.4E-6 | 76 | 140 | IPR004827 | Basic-leucine zipper domain |
| CDD | cd14703 | 5.33E-18 | 82 | 128 | No hit | No description |
| SuperFamily | SSF57959 | 3.81E-10 | 83 | 130 | No hit | No description |
| Gene3D | G3DSA:1.20.5.170 | 1.7E-10 | 83 | 134 | No hit | No description |
| Pfam | PF00170 | 3.0E-8 | 84 | 126 | IPR004827 | Basic-leucine zipper domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 173 aa Download sequence Send to blast |
MLPFMEDEVR LGGGWKQNWA RGLHYLRSGR RGLGSLSCVQ WWYYVAVLLT VLTSSQGLLK 60 IQWLEKSVLP SPCSLNTRGT LLQRILANRQ SAARSKERKA RYIQELKQKV QTLQTEATTL 120 SAQLTLFEGI LTSLFQSNGK YMYDYATISF LAEVFKLLVS SLLLWRECRA SL* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6i1r_A | 1e-13 | 124 | 171 | 13 | 60 | CMP-sialic acid transporter 1 |
| 6i1r_B | 1e-13 | 124 | 171 | 13 | 60 | CMP-sialic acid transporter 1 |
| 6i1z_A | 1e-13 | 124 | 171 | 13 | 60 | CMP-sialic acid transporter 1 |
| 6i1z_B | 1e-13 | 124 | 171 | 13 | 60 | CMP-sialic acid transporter 1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | KP229678 | 1e-34 | KP229678.1 UNVERIFIED: Boehmeria nivea Basic leucine zipper transcription factor-like (bZIP12) mRNA, complete sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_022944406.1 | 5e-19 | transcription factor RF2b-like | ||||
| Refseq | XP_022986886.1 | 4e-19 | transcription factor RF2b-like | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G06850.2 | 2e-21 | basic leucine-zipper 52 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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