PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G033926.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ARF
Protein Properties Length: 714aa    MW: 80582.1 Da    PI: 6.58
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G033926.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3802.5e-25145245198
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f k+ltpsd++++g +++pk+ a+e+       +  ++  ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv+a++L +gD+++F
  HL.SW.v1.0.G033926.1 145 FSKILTPSDTSTHGGFSVPKRQADECfplldmlQ--QPPVQELVAKDLHGLEWHFRHIFRGQPKRHLLTSGWSTFVSAKKLVAGDSCIF 231
                           88*****************************654..444558*********************************************** PP

                           EE-SSSEE..EEEEE- CS
                    B3  83 kldgrsefelvvkvfr 98 
                              + +++el+v+v+ 
  HL.SW.v1.0.G033926.1 232 L--RGEDGELRVGVRH 245
                           *..449999****986 PP
2Auxin_resp94.12.2e-31272354183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           a h++st++ F+v+Y+P++s++eF++++e+++k++++ + +G++f   fe+e++se+r++Gt+v v+d d +rWp+S Wr+Lk
  HL.SW.v1.0.G033926.1 272 AFHSISTGTLFTVYYRPWTSPAEFIIPYEEYMKSVENDYVAGTKFGYTFEGEECSEKRFTGTIVRVEDHDGIRWPGSDWRCLK 354
                           6799*****************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.84E-36132274IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-39139255IPR015300DNA-binding pseudobarrel domain
CDDcd100174.03E-23143244No hitNo description
SMARTSM010191.4E-22145247IPR003340B3 DNA binding domain
PROSITE profilePS5086312.985145247IPR003340B3 DNA binding domain
PfamPF023621.2E-22145245IPR003340B3 DNA binding domain
PfamPF065074.3E-29272354IPR010525Auxin response factor
SuperFamilySSF542771.47E-9590664No hitNo description
PROSITE profilePS5174516.861593681IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MGCGGVQRTG LCSVNGVEKP GRRCFEVPTN NEGGVKDELY IDLWHACAGR HVRVPRLGEK  60
VYYFPQGHIE QVQAYANEDG NMDMPIYNLP PKILCRVVYI QLKAEAQTDE VFAQVTLFPL  120
TDEDELSSDD ENIITLPKRT KVFSFSKILT PSDTSTHGGF SVPKRQADEC FPLLDMLQQP  180
PVQELVAKDL HGLEWHFRHI FRGQPKRHLL TSGWSTFVSA KKLVAGDSCI FLRGEDGELR  240
VGVRHATKRT PNNASTSVIS GHSMQHGILA SAFHSISTGT LFTVYYRPWT SPAEFIIPYE  300
EYMKSVENDY VAGTKFGYTF EGEECSEKRF TGTIVRVEDH DGIRWPGSDW RCLKVEWDAK  360
SNISILPGRL SPWNIKPVDS TDKTDTFVRP PPKRRRELHL PSSEFSTLAS EVKCTPQRHK  420
EVLQGQEISV IHAHEPGARI QSMLPKFVMP PNPEWKQAQL KFETQLQVPF YQYPREQMAF  480
PGETTAKTSL TNQWWSMYAP YRGSDSAAFT KSFSVSNGNS SHSGSQEYMT FEQRSDDVAP  540
RYPNGCDKYM LFGVNLFNSH PELPSPQVSD TSKSVSDVFP EKQCKQCCSI NNRSCIKVLK  600
HGTALGRSMD LAHFDGYTEL IAELDQMFDF NGSLIDGSSE WKVTYMDIEG DLMLVGDYDW  660
QLSTKTNTFC PNHNRLTCLA FRSAARKIFI CPKEEINKLS PSSLKSSLLV DDE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1323338413361Auxin response factor 1
4ldw_A1e-1323338413361Auxin response factor 1
4ldw_B1e-1323338413361Auxin response factor 1
4ldx_A1e-1323338413361Auxin response factor 1
4ldx_B1e-1323338413361Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024032050.10.0auxin response factor 2A
TrEMBLW9SBI60.0W9SBI6_9ROSA; Auxin response factor
STRINGXP_010112723.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131052329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-148auxin response factor 2