PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G033943.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 226aa    MW: 25585.8 Da    PI: 9.5908
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G033943.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3391.4e-121432081786
                           E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
                    B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 
                            +p++    h+g+k e+ +++l+  +++ W vk++ +k + r+++++GWk+F ++n+Lk++D + F+l+ g
  HL.SW.v1.0.G033943.1 143 LIPRSV---HKGVKFEP-DMKLQYHNSKLWPVKISTWKDG-RCFISSGWKQFRQENDLKANDKCKFELVlG 208
                           455554...45666555.9***************988885.899***********************8733 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508637.218146IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-4246IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-6264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-16123210IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-17124212IPR015300DNA-binding pseudobarrel domain
CDDcd100176.57E-12126206No hitNo description
PROSITE profilePS5086310.405127222IPR003340B3 DNA binding domain
SMARTSM010191.3E-7128216IPR003340B3 DNA binding domain
PfamPF023624.6E-11141208IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
LIPPAFVGRF ISRVPKRVVI KDTSGKCWVV ALVTVEKDLY FENGWEIYHG NSLFEVEIFG  60
GNGCKKEIVV ASPQVKVMVK EEEDTLKKKV PSSHAYNHAH IEEIGLDGST KKSSSSTKHV  120
QLKKNPCFVV TLEQSKCQVF MILIPRSVHK GVKFEPDMKL QYHNSKLWPV KISTWKDGRC  180
FISSGWKQFR QENDLKANDK CKFELVLGEG NVCKEIKVTC QSKVQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5FY275e-66A0A2P5FY27_TREOI; B3 DNA binding domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143221518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.15e-11B3 family protein