PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G034350.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family FAR1
Protein Properties Length: 249aa    MW: 28432.3 Da    PI: 7.3605
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G034350.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.91.9e-1446132191
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                           ++Y+eY+ +  F ++k+++  s ++++i   t+ Cs+ gk++++k++     ++ + tr++Cka+++ +  +d+k +++ + leHnH l
  HL.SW.v1.0.G034350.1  46 DYYREYGMQEDFVIKKKTTCAS-KDRKIRFLTLLCSRAGKSASQKQH---CLNPIPLTRVECKAMINDSILEDEKCKINLVILEHNHGL 130
                           59***************99999.6666***************99887...999***********************************9 PP

                  FAR1  90 ap 91 
                           +p
  HL.SW.v1.0.G034350.1 131 SP 132
                           86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-1146132IPR004330FAR1 DNA binding domain
PfamPF105511.7E-12200246IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDFAKQKSER VLDVQKEKDA RECLENLKSH ESESGMYFSS FNDLYDYYRE YGMQEDFVIK  60
KKTTCASKDR KIRFLTLLCS RAGKSASQKQ HCLNPIPLTR VECKAMINDS ILEDEKCKIN  120
LVILEHNHGL SPQKSRFYLC NREISLGAQR KLELNDRAGI SVVKNFQSFV VEVGDDKSRF  180
KNGFWVDARS KAIYEEFGDV VSFNTTYLTN NYDMPFAPFV GVNHYGQSIL LGCGLLSSET  240
TETFISIV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015893354.12e-69protein FAR-RED IMPAIRED RESPONSE 1-like
RefseqXP_024923569.12e-69protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLM5WNR61e-64M5WNR6_PRUPE; Uncharacterized protein
STRINGEMJ154172e-65(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.11e-32FAR1-related sequence 8