PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G034521.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bZIP
Protein Properties Length: 365aa    MW: 38431.6 Da    PI: 7.8096
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G034521.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.84.2e-22295357163
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           e+elkr++rkq+NRe+ArrsR+RK+ae++eL++++++L++eN  L++e+++++ e+++l se+
  HL.SW.v1.0.G034521.1 295 ERELKRQKRKQSNRESARRSRLRKQAECDELAQRADALKEENANLRSEVNRIRSEYDQLLSEN 357
                           89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077776.0E-31198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165965.4E-47138262No hitNo description
Gene3DG3DSA:1.20.5.1707.5E-18288353No hitNo description
PfamPF001701.1E-20295357IPR004827Basic-leucine zipper domain
SMARTSM003385.4E-22295359IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.15297360IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-11298354No hitNo description
CDDcd147024.28E-25300351No hitNo description
PROSITE patternPS000360302317IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGSSEMDKPA KDKEKDSKTP PPSTQEQSST TSTGAVNPDW SGFQAYSPMP PHGFLASSPQ  60
AHPYMWGVQH IMPPYGTPPH PYVAMYPHGG LYAHPSMPPG SYPFSPFAIP PPNGIAAEAS  120
GNTPGSIEAD GRPSEVKEKL PIKRSKGSLG SLNMITGKNS ELGKGSGGSA NGGYSKSAES  180
ASEGSSEGSD VNSQDVSDAS QNGNSMHGPQ NGGPNTPHSM VNQTMTIMPI TAAGAPGAVP  240
GPATNLNIGM DYWGAPAASA IPALRGKVPS TPVAGGIVTA GSRDSVQSQL WLQDERELKR  300
QKRKQSNRES ARRSRLRKQA ECDELAQRAD ALKEENANLR SEVNRIRSEY DQLLSENTSL  360
KVMP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311317RRSRLRK
2311318RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296811e-155KP229681.1 UNVERIFIED: Boehmeria nivea Basic leucine zipper transcription factor-like (bZIP15) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088657.10.0bZIP transcription factor 16
SwissprotQ501B21e-168BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A2P5FX620.0A0A2P5FX62_TREOI; Basic-leucine zipper transcription factor
STRINGXP_010088657.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40173256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-142basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]