PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G034544.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 180aa    MW: 19725.5 Da    PI: 4.197
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G034544.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.11.1e-10159179222
                           --SS-EEEEEEE--TT-SS-E CS
                  WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                           dDgy+WrKYGqK++k++++pr
  HL.SW.v1.0.G034544.1 159 DDGYKWRKYGQKSIKNTPNPR 179
                           8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-9150179IPR003657WRKY domain
PROSITE profilePS5081113.081153179IPR003657WRKY domain
SuperFamilySSF1182903.27E-8154179IPR003657WRKY domain
PfamPF031065.8E-7159179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MELLEEVIGS GSTSRDWSLS SSSGSGSEDE LVRELLDDVS PFFLIQEEST THNNIQNELL  60
LDDEDDDDDD DGVIISDQEV VTKINSANLL YSGPTIQDIE NALSVTAPKS QPHHQLSSSS  120
PAFRNSILER GLGLMSSKSI DNKYTLKIKS SATNNGMTDD GYKWRKYGQK SIKNTPNPR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5DS383e-41A0A2P5DS38_TREOI; WRKY domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-20WRKY DNA-binding protein 49