PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G034677.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family RAV
Protein Properties Length: 472aa    MW: 54441 Da    PI: 7.0115
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G034677.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.63.7e-0996143255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           ++kGV    ++g W A+I+       + +r++lg+f +++ Aa a++ a+ +l++
  HL.SW.v1.0.G034677.1  96 KFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEKAAAMAYDSAAIRLRN 143
                           789996.566899****999......44**********99*************97 PP
2B377.81.2e-24241377198
                           EEEE-..-HHHHTT-EE--HHH.HTT.........................---......................--SEEEEEETTS- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........................ggkke....................esktltledesgr 44 
                           f+k+ltpsdv+k++rlv+pkk+a ++                         +   +                    e+++l+++d+  r
  HL.SW.v1.0.G034677.1 241 FQKELTPSDVGKLNRLVIPKKYAVKYfpyiseldnnnntnnnpnsnitnnsN---NscnnttnnsnivetttesgvEDIELVFYDKLMR 326
                           99*****************************999888776666665555550...055555555566666666777889999999999* PP

                           EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3  45 sWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                           sW+++++y+++s+++v+t+GW++Fvk+n+Lk++D+++F+  + ++   v+++++
  HL.SW.v1.0.G034677.1 327 SWRFRYCYWRSSQSFVFTRGWNRFVKENNLKANDVITFYTCH-KCN--VHGIRD 377
                           ***************************************433.444..555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.11E-1195153No hitNo description
PfamPF008471.8E-496143IPR001471AP2/ERF domain
SMARTSM003801.2E-1996157IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-1496152IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-1696151IPR001471AP2/ERF domain
PROSITE profilePS5103217.00396151IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.4E-31238271IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.26E-23240271IPR015300DNA-binding pseudobarrel domain
CDDcd100173.11E-22240365No hitNo description
PfamPF023621.5E-22241377IPR003340B3 DNA binding domain
SMARTSM010195.4E-22241379IPR003340B3 DNA binding domain
SuperFamilySSF1019362.26E-23309371IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-31309393IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.715317390IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MDQDDSSSMI SSAKTNIIIG GSNTLAATTV ETSGSNNTNY AVHQNVQRNN YFKRARHDHH  60
QNHHHNHHDY VDQTANICDI SDNNNNIMNI GSPSAKFKGV VPQQNGHWGA QIYANHQRIW  120
LGTFKSEKAA AMAYDSAAIR LRNGDTHRNF PWTNLTLHEP DFQSHYTMEA VLNMIKDGSY  180
QSKFEEFLRN QSQKKEVVEI NSVSTTRHHQ DHDHHLHPHH HHFNQQIRVH GDAQFLCRQL  240
FQKELTPSDV GKLNRLVIPK KYAVKYFPYI SELDNNNNTN NNPNSNITNN SNNSCNNTTN  300
NSNIVETTTE SGVEDIELVF YDKLMRSWRF RYCYWRSSQS FVFTRGWNRF VKENNLKAND  360
VITFYTCHKC NVHGIRDENG QIFCLIDVTH NGVIESQRCL NNSTNSNIEL MKVDLDLDLD  420
LDLDHHHHPE DKFDHEPIAI TTTHHEFKYK EAEASSSVEG KKFRLFGVDI K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-2424036413100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087389.11e-142AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6881e-103RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A2P5BJ450.0A0A2P5BJ45_PARAD; AP2/ERF transcription factor
STRINGXP_010087389.11e-142(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-105RAV family protein