PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G034680.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

NF-YA

Protein Properties

Length: 257aa MW: 28748.1 Da PI: 6.6033

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G034680.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.8	7.6e-33	159	215	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k+ +ksrkpylheSRh hAlrR+Rg+gGrF HL.SW.v1.0.G034680.1 159 EEPVFVNAKQYHGILRRRQSRAKAESENKV-IKSRKPYLHESRHLHALRRARGCGGRF 215 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.9E-37	157	218	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.39	158	218	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.2E-27	160	215	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.7E-23	161	183	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	163	183	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.7E-23	192	215	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MSGFGAQFVL QIDIDVAYVE NFAFFLETWE LRCDLRVEVS KSFPMLQSSK REQLDNCEAD 60 EQQKQSESQI QSSSPAPGMS HTVMSTPNVQ YATSPQFGAG HAVAPAAAYP YPDPYYRSIF 120 APYDAQPYPP QPYGGQPMVH LQLMGIQQAG LPLPSDAVEE PVFVNAKQYH GILRRRQSRA 180 KAESENKVIK SRKPYLHESR HLHALRRARG CGGRFLNAKK NEKHEDEDED TQVDKSQPHI 240 NLNSDKNERA PADGTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-20	158	222	1	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024022777.1	1e-127	nuclear transcription factor Y subunit A-7
Refseq	XP_024022778.1	1e-127	nuclear transcription factor Y subunit A-7
Refseq	XP_024022779.1	1e-127	nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	7e-69	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A2P5C143	1e-125	A0A2P5C143_PARAD; Nuclear transcription factor Y subunit A
STRING	XP_010098569.1	1e-122	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5379	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-53	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]