PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G034769.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 396aa    MW: 44352.5 Da    PI: 9.7076
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G034769.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-16453148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                          r+rW +eEd ll  +vkq+G++ W++I+++mg  ++R +k+c +rw +yl
  HL.SW.v1.0.G034769.1  4 RQRWQPEEDALLRAYVKQYGPKEWNLISQRMGkpLHRDPKSCLERWKNYL 53
                          89**********************************************97 PP
2Myb_DNA-binding34.54.8e-1159100144
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                           +g+ T+eE+ l + + +++G++ Wk+Ia++++ gRt+k +  +w
  HL.SW.v1.0.G034769.1  59 KGSLTPEEQSLVISLQAKYGNK-WKKIAAEVP-GRTAKRLGKWW 100
                           6788******************.*********.*****988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.074157IPR017930Myb domain
SMARTSM007171.5E-14355IPR001005SANT/Myb domain
SuperFamilySSF466891.69E-22498IPR009057Homeodomain-like
CDDcd001673.98E-10653No hitNo description
Gene3DG3DSA:1.10.10.607.0E-21660IPR009057Homeodomain-like
PfamPF139212.3E-15769No hitNo description
SMARTSM007171.8E-958106IPR001005SANT/Myb domain
PROSITE profilePS5129417.63958108IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-1561107IPR009057Homeodomain-like
CDDcd001671.83E-663100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010338Biological Processleaf formation
GO:0042742Biological Processdefense response to bacterium
GO:0045088Biological Processregulation of innate immune response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0050832Biological Processdefense response to fungus
GO:0000793Cellular Componentcondensed chromosome
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MKERQRWQPE EDALLRAYVK QYGPKEWNLI SQRMGKPLHR DPKSCLERWK NYLKPGLKKG  60
SLTPEEQSLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFNEKQLKQ LHKNMSSSSP  120
SSLLISGTNS LQSHHHHHHQ LYPEGNIPVA RAGSPETAAQ GPYDHILDTF AEKYVQPKLY  180
AAGGDAAFMP AMVVTDPDPV LSLGSVNSAA PSAATLVPPW MNPPSSSAAT SSLSSCTSST  240
PSPSVSLSLS PSEPVMDLEM SRFVPVQQLG SIVQYCKELD EGRLSLLQHK KEATWRLSRL  300
EQQLESEKAR KRREKIEETE AKIRSLREEE MVSLSRIENE YRDQLSVLHR EAENKEAKLV  360
EAWCSKHVKL AKLVDQIGVH GAASLRVTTT NTRPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A1e-1411100995MYB3
3zqc_D1e-1411100995MYB3
3zqc_G1e-1411100995MYB3
3zqc_J1e-1411100995MYB3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309314RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022935393.11e-169protein rough sheath 2 homolog
TrEMBLA0A2P5F6W90.0A0A2P5F6W9_TREOI; Octamer-binding transcription factor
STRINGXP_009349281.11e-158(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25973369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.12e-83MYB family protein