PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G034772.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 331aa    MW: 36763.8 Da    PI: 9.1585
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G034772.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.17.2e-12117161347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            W++eE+  ++ + ++lG g+W+ I++ + k R++ q+ s+ qky
  HL.SW.v1.0.G034772.1 117 QWSEEEHRTFLMGLRELGRGDWRGISKDFVKSRSPSQVASHAQKY 161
                           7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.617108166IPR017930Myb domain
SMARTSM007171.8E-8114164IPR001005SANT/Myb domain
SuperFamilySSF466899.72E-13114164IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-9116161IPR009057Homeodomain-like
PfamPF002491.5E-9117161IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.1E-13117165IPR006447Myb domain, plants
CDDcd001674.97E-8118161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MVRVDYVRKC SNCKQNGHNT RTCNKNVEQH NIDDENKFRL FGVDISLSDS DKGTGESMEK  60
SLSLNNLAEA ESSGADGSNV VVTVPPHDHD AGFLSGDLLH STRRKDAHER IRGTGKQWSE  120
EEHRTFLMGL RELGRGDWRG ISKDFVKSRS PSQVASHAQK YYTRQVLSEE RKNRRRSVFD  180
ISLRTSSPAR TSLFEKKPLD KVTSEFQNRF PSQCLDNYGT FSSHYRLLVP PGPLTNCGTA  240
PSELYMYMAN NNVAKDKSSF ASNTGNTHSF GALLPKSLPK SSPKEPCVVA SSSSSSSSSS  300
SVDLKDGQPQ HSNNFKDSNY LPLHVRLLLE *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138741921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.13e-45MYB_related family protein