PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G035058.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

NAC

Protein Properties

Length: 213aa MW: 24882.1 Da PI: 4.5996

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G035058.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	88.9	9e-28	9	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrF Ptdeel+ ++L +kv + + ++i+++d++ ++Pw++ ++ ++ + yfFsk+ + +at++gyWk+ + HL.SW.v1.0.G035058.1 9 LPPGFRFCPTDEELILQFLYPKVFLIPSTHLNIIPDLDLHLYHPWEFTGTALSSGNMHYFFSKKTE--------DKATSNGYWKEMDIN 89 79*********************99888899**********9665566788899998766........457999***** PP NAM 90 kevlsk.kgelvglkktLvfy....kgrapkgektdWvmheyrl 128 ++++++ ++++vg+kk v++ +++ ++++t+W+m+ey+l HL.SW.v1.0.G035058.1 90 EPIFVSgDHNKVGVKKYYVYFvinhHESPTSATETNWIMEEYNL 133 9977888*****9887656777889*******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-34	7	165	IPR003441	NAC domain
PROSITE profile	PS51005	34.396	9	167	IPR003441	NAC domain
Pfam	PF02365	1.7E-19	10	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MGDNQGVKLP PGFRFCPTDE ELILQFLYPK VFLIPSTHLN IIPDLDLHLY HPWEFTGTAL 60 SSGNMHYFFS KKTEDKATSN GYWKEMDINE PIFVSGDHNK VGVKKYYVYF VINHHESPTS 120 ATETNWIMEE YNLCNNLEWM STTSPTYKRR RKLKLDFKWV LCRVHERKLD DISLQCIQYE 180 DDDNGTELSC LDEMFLSSLD DDLDEVSMQI LD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-22	7	168	15	166	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-22	7	168	15	166	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-22	7	168	15	166	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-22	7	168	15	166	NO APICAL MERISTEM PROTEIN
3swm_A	6e-22	7	168	18	169	NAC domain-containing protein 19
3swm_B	6e-22	7	168	18	169	NAC domain-containing protein 19
3swm_C	6e-22	7	168	18	169	NAC domain-containing protein 19
3swm_D	6e-22	7	168	18	169	NAC domain-containing protein 19
3swp_A	6e-22	7	168	18	169	NAC domain-containing protein 19
3swp_B	6e-22	7	168	18	169	NAC domain-containing protein 19
3swp_C	6e-22	7	168	18	169	NAC domain-containing protein 19
3swp_D	6e-22	7	168	18	169	NAC domain-containing protein 19
4dul_A	6e-22	7	168	15	166	NAC domain-containing protein 19
4dul_B	6e-22	7	168	15	166	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010090830.1	4e-75	NAC domain-containing protein 104
TrEMBL	A0A2P5E7M9	1e-109	A0A2P5E7M9_TREOI; NAC domain containing protein
STRING	XP_010090830.1	2e-74	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	7e-45	xylem NAC domain 1