PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G035065.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 174aa    MW: 20054.2 Da    PI: 6.2644
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G035065.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM136.32.1e-42191522127
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkklelee....vikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                            pG+rF Pt+eel+++yL++k+eg++ +l++    vi+ +diy+++PwdLp+     ++++ ++++fF++r++++a+g r++r t++gy
  HL.SW.v1.0.G035065.1  19 IPGYRFYPTEEELISFYLHNKLEGQREDLNRlinrVIPLLDIYEFNPWDLPQysgvPCQGDPEQCFFFIPRQESEARGGRPSRLTETGY 107
                           59************************55433333379999***********64655444566799************************ PP

                   NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                           Wkatg+   v+s++++ +glk+t+vfy+grap+g+kt+W m+ey+
  HL.SW.v1.0.G035065.1 108 WKATGSPSYVYSSRNRIIGLKRTMVFYNGRAPHGTKTQWKMNEYK 152
                           ********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-4316153IPR003441NAC domain
PROSITE profilePS5100541.2218174IPR003441NAC domain
PfamPF023651.2E-2120152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MENNNDNHNN NNNNDNSTIP GYRFYPTEEE LISFYLHNKL EGQREDLNRL INRVIPLLDI  60
YEFNPWDLPQ YSGVPCQGDP EQCFFFIPRQ ESEARGGRPS RLTETGYWKA TGSPSYVYSS  120
RNRIIGLKRT MVFYNGRAPH GTKTQWKMNE YKAIAIQGEP TITSSTTATP DPPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-312015217139Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243510.16e-83PREDICTED: NAC domain-containing protein 90-like
SwissprotQ9FMR33e-60NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A2P5EBH15e-95A0A2P5EBH1_TREOI; NAC domain containing protein
STRINGXP_008243510.12e-82(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-62NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]