PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G035095.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Trihelix
Protein Properties Length: 275aa    MW: 31911.5 Da    PI: 5.0191
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G035095.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.92.5e-13116200286
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           Wt++   +L+e+  ++  +l+r++l+  +Weev++k+ +  ++er+  qC++ +e+l+k+ykk+k  +++    +ss++ +f++++
  HL.SW.v1.0.G035095.1 116 WTEHGMFVLLEVWGNRFLQLGRKSLRSEDWEEVAEKVsETSKIERKESQCRNMLESLKKKYKKEKLKMEQM-GLKSSKWGFFKKID 200
                           *************************************555678**********************999986.89999******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.2E-18114201No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEAIGDDPRY PRKSYTPIPY GSSNPQKQKT RTRDTPFTRP IPNFNDDDEM DEFNEEIDHK  60
NGNINGSSRN FDEEEDFLKY PKKRKMKNLV SAYEFAPWVK QSESGRTTSR ADEDDWTEHG  120
MFVLLEVWGN RFLQLGRKSL RSEDWEEVAE KVSETSKIER KESQCRNMLE SLKKKYKKEK  180
LKMEQMGLKS SKWGFFKKID MLMASSPRQD YGLACGVDSG EFVFMNTRVY LDRSDGFDEM  240
KDSPMESEAS EEETEDGNGG RDWDKGLRAA RGTK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17884KYPKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347160.17e-89PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A498HUX27e-89A0A498HUX2_MALDO; Uncharacterized protein
STRINGXP_009347160.13e-88(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.12e-54Trihelix family protein