PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G035201.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 307aa    MW: 34469.8 Da    PI: 4.742
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G035201.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-161461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g WT+eEd +lv +v+++G  +W+  ++  g++R++k+c++rw +yl
  HL.SW.v1.0.G035201.1 14 KGTWTPEEDRKLVAYVTRYGCWNWRQLPKFAGLKRCGKSCRLRWMNYL 61
                          799*****************99************************97 PP
2Myb_DNA-binding53.26.9e-1767112148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg+ ++eE+e + ++++ lG++ W++Ia+ ++ gRt++++k++w+++l
  HL.SW.v1.0.G035201.1  67 RGNYSPEEEETITKLHESLGNK-WSAIAAQLP-GRTDNEVKNYWHTHL 112
                           899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.424961IPR017930Myb domain
SuperFamilySSF466892.06E-2911108IPR009057Homeodomain-like
SMARTSM007173.5E-111363IPR001005SANT/Myb domain
PfamPF002494.6E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-221568IPR009057Homeodomain-like
CDDcd001679.46E-101661No hitNo description
PROSITE profilePS5129424.36462116IPR017930Myb domain
SMARTSM007174.6E-1666114IPR001005SANT/Myb domain
PfamPF002492.3E-1567112IPR001005SANT/Myb domain
CDDcd001672.84E-1169112No hitNo description
Gene3DG3DSA:1.10.10.603.0E-2669115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MVRTPCCDQN GMKKGTWTPE EDRKLVAYVT RYGCWNWRQL PKFAGLKRCG KSCRLRWMNY  60
LRPNVKRGNY SPEEEETITK LHESLGNKWS AIAAQLPGRT DNEVKNYWHT HLKKRQTQNP  120
SPSSSCKQKI SESSTTKESN STTLDNVTPN VDDYFMDSLE ELMFTGADLT SDQIVANSNN  180
NVHSPLSPQP SSSSSEISTS TTDTSTSTAS TNNATETSTI NNDSSSNYLV EDSYNHPFEG  240
FPEFSDSFWT EPFLADHNSY IPSDFLNASL MDSYELSPIL DANLLFTANT SIGNFNYEEN  300
LVGLLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141157107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010095861.11e-107transcription factor MYB14
TrEMBLA0A2P5D1161e-115A0A2P5D116_TREOI; GAMYB transcription factor
STRINGXP_010095861.11e-107(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-62myb domain protein 14