PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G035408.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 194aa    MW: 21987 Da    PI: 10.3928
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G035408.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.12.1e-50251531128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrF P+d+el+v+yL++kv++k+l++ ++i+++d+yk++Pw+Lpkk++ +e+ewyfFs+rd+ky++g+r+nra+  gyWkatg d
  HL.SW.v1.0.G035408.1  25 LPPGFRFYPSDQELIVHYLQNKVASKPLPA-SFIADIDLYKYNPWELPKKAAFGEEEWYFFSPRDRKYPKGDRPNRAAGLGYWKATGID 112
                           79****************************.89***************999999*********************************** PP

                   NAM  90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k+++s+   ++++g+kk Lvfy gr pkgektdW+m+eyrl
  HL.SW.v1.0.G035408.1 113 KPIFSSygLSKKIGVKKGLVFYAGRPPKGEKTDWFMNEYRL 153
                           *****9877788***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-5716161IPR003441NAC domain
PROSITE profilePS5100552.86925177IPR003441NAC domain
PfamPF023651.5E-2426153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEREPSSSSS GSGSTTNTTT SNPRLPPGFR FYPSDQELIV HYLQNKVASK PLPASFIADI  60
DLYKYNPWEL PKKAAFGEEE WYFFSPRDRK YPKGDRPNRA AGLGYWKATG IDKPIFSSYG  120
LSKKIGVKKG LVFYAGRPPK GEKTDWFMNE YRLLDSSPIN KSPRFKGSMR VSEQKNRVLK  180
IVPVSYRETK QSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-582516517154NO APICAL MERISTEM PROTEIN
1ut4_B4e-582516517154NO APICAL MERISTEM PROTEIN
1ut7_A4e-582516517154NO APICAL MERISTEM PROTEIN
1ut7_B4e-582516517154NO APICAL MERISTEM PROTEIN
3swm_A5e-582516520157NAC domain-containing protein 19
3swm_B5e-582516520157NAC domain-containing protein 19
3swm_C5e-582516520157NAC domain-containing protein 19
3swm_D5e-582516520157NAC domain-containing protein 19
3swp_A5e-582516520157NAC domain-containing protein 19
3swp_B5e-582516520157NAC domain-containing protein 19
3swp_C5e-582516520157NAC domain-containing protein 19
3swp_D5e-582516520157NAC domain-containing protein 19
4dul_A4e-582516517154NAC domain-containing protein 19
4dul_B4e-582516517154NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104110.13e-81NAC transcription factor 56
SwissprotA2YMR03e-68NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBLA0A2P5E4C42e-87A0A2P5E4C4_TREOI; NAC domain containing protein
STRINGXP_010104110.11e-80(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.15e-69NAC domain containing protein 25