PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G035586.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family CAMTA
Protein Properties Length: 990aa    MW: 109312 Da    PI: 5.7594
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G035586.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.66.4e-55151293116
                  CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                           +e + rwlk+ e++ iL+n+ek++lt+e++++p+sgsl+Lyn++++r+frkDG++w+kkkdg+tv E+he+LKvg+ve+l+cyYah+ee
  HL.SW.v1.0.G035586.1  15 QEaQIRWLKPAEVLFILQNHEKYKLTQEPPKKPTSGSLLLYNKRILRFFRKDGHNWRKKKDGRTVGEAHERLKVGNVETLNCYYAHGEE 103
                           55589************************************************************************************ PP

                  CG-1  91 nptfqrrcywlLeeelekivlvhyle 116
                           np+fqrr+yw+L+ ++e+ivlvhy++
  HL.SW.v1.0.G035586.1 104 NPSFQRRSYWILDPAYEHIVLVHYRD 129
                           ************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.61510136IPR005559CG-1 DNA-binding domain
SMARTSM010761.2E-7413131IPR005559CG-1 DNA-binding domain
PfamPF038591.5E-4716129IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.108.6E-10427514IPR013783Immunoglobulin-like fold
PfamPF018332.0E-11430513IPR002909IPT domain
SuperFamilySSF812963.5E-19430514IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.203.5E-15625720IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.308626720IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.32E-15629721IPR020683Ankyrin repeat-containing domain
CDDcd002042.26E-13631718No hitNo description
PfamPF127963.2E-8642720IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.22659691IPR002110Ankyrin repeat
SMARTSM002485.2E-4659688IPR002110Ankyrin repeat
SMARTSM002482800698727IPR002110Ankyrin repeat
SMARTSM0001518776798IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.382777805IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.19E-8777881IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000154.5829851IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.84830859IPR000048IQ motif, EF-hand binding site
PfamPF006120.021832850IPR000048IQ motif, EF-hand binding site
SMARTSM000151.9E-4852874IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.011853877IPR000048IQ motif, EF-hand binding site
PfamPF006123.8E-5855874IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 990 aa     Download sequence    Send to blast
MKKMQSGYDI NDLFQEAQIR WLKPAEVLFI LQNHEKYKLT QEPPKKPTSG SLLLYNKRIL  60
RFFRKDGHNW RKKKDGRTVG EAHERLKVGN VETLNCYYAH GEENPSFQRR SYWILDPAYE  120
HIVLVHYRDI AEGNSSSGSG SGSGSGSGSG SAAQLSTESI MSFSQSPSPC NTQNAGSLCV  180
SDYQSFTPGS IEVTSDLVIQ LNGSGHCDSM DGTEGVFGAT QGVVNQALRK LEEQLSLNED  240
SVKNFESPSQ LEDPNDPDIL EYDSQVYNQN KLLDFNGPGN LAGDQCYSGY DGVPGDSGGD  300
HHQLLEHEHR YGGKESVSWK EVLDSCNISS GIECQNNHAL LNGNQLEFTR NGPTEEQEYL  360
QWQNPNSSIV NNASSLMCQE VDNLKISSYP STSKVLDTNS DYYAMFFGQG QIGPLESGVS  420
LTIEQKQRFT IREVSPEWGY TTEATKIIIV GSFLCDSSES AWNCMFGDIE VPAQIIQEGV  480
LRCEAPPHPS GKVTICITAG NRQSCSEVRE FEYRLKPSSY VQSNPPSTES TKSPEELLLL  540
VRFVQMLLSD SSMPNRDSNV LDAPQKLTAD VDSWDSLIES LLVGSGTLSS TIDWILEELL  600
KDKLLQWISS RSWEQQDQTG CSLSKKEQGI IHMVAGLGFE WTLNPILSSG VSINFRDING  660
WTALHWAARF GREKMVAALI ASGASAGAVT DPSSQDPTGK TAASIAATSG HKGLAGYLAE  720
VALTSHLLSL TLEESELSKG SAEVEAEKTV NSISNHGFIA HEDPLLLKPT LAAVRNAAQA  780
AARIQSAFRA HSFRKQQQKE AVGSSVDEYG ISLNEISAMS KLKFRNPRDY NSAALSIQKK  840
YRGWKGRKDF LALRQKVVKI QAHVRGYQVR KNYKVICWAV GVLEKVVLRW RRKGAGLRGY  900
RPETDSTDES EDILKVFRKQ KVDGAIKEAF SRVMSMVKSS EARQQYIRVF EKYCQVKGER  960
GNASTEAAAA SAELADLYGL EDVDMFSFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cxk_A7e-13431519994calmodulin binding transcription activator 1
2cxk_B7e-13431519994calmodulin binding transcription activator 1
2cxk_C7e-13431519994calmodulin binding transcription activator 1
2cxk_D7e-13431519994calmodulin binding transcription activator 1
2cxk_E7e-13431519994calmodulin binding transcription activator 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017619.10.0calmodulin-binding transcription activator 4
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A2P5C1S10.0A0A2P5C1S1_TREOI; Serine/threonine protein kinase
STRINGXP_008222185.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]