PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G035673.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 253aa    MW: 27211.7 Da    PI: 4.5584
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G035673.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-05229251223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +C+ C+k+F++   L++H +  H
  HL.SW.v1.0.G035673.1 229 SCKTCSKTFNSDKALESHTKAkH 251
                           6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.263228252IPR007087Zinc finger, C2H2
PROSITE patternPS000280230251IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
AVLGETKSKG GETVYLYVKI GDQKFVLANL SLDKFPQVTF DLVFDQEVEV SHNWKNGKQY  60
LTDSSDEEAE VPVTAVENGK GAEKVAAKPV VGKSNDDAKP EAYGKAKVKL VEPSKDDEDD  120
DSDDSDDDES DEMDSEDESD EDMIEGDDSS SDEEDDDETP KKPEVIKKRP TESATKTPVS  180
SKKAKVASPK SDKKAAHVGT PHPSKKAAAK SPATTDKSKQ TPKSAGQVSC KTCSKTFNSD  240
KALESHTKAK HV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024031877.16e-64histone deacetylase HDT1 isoform X1
TrEMBLW9R3F03e-62W9R3F0_9ROSA; Histone deacetylase HDT1
STRINGXP_010089160.16e-63(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-15histone deacetylase 3