PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G035685.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 317aa    MW: 35777.5 Da    PI: 7.3052
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G035685.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding591e-182370148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+WT eEd ll+++++++G g+W++ a++ g++Rt+k+c++rw++yl
  HL.SW.v1.0.G035685.1 23 RGPWTVEEDTLLIHYITRHGEGRWNLLAKRSGLRRTGKSCRLRWLNYL 70
                          89********************************************97 PP
2Myb_DNA-binding53.55.5e-1776119146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg+ T+eE+ l++d++ ++G++ W++Ia++++ gRt++++k++w++
  HL.SW.v1.0.G035685.1  76 RGNLTPEEQILILDLHSKWGNR-WSKIAQYLP-GRTDNEIKNYWRT 119
                           7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.0261870IPR017930Myb domain
SuperFamilySSF466897.86E-3121117IPR009057Homeodomain-like
SMARTSM007179.5E-162272IPR001005SANT/Myb domain
PfamPF002491.3E-162370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-232477IPR009057Homeodomain-like
CDDcd001672.40E-122570No hitNo description
PROSITE patternPS0017503847IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.45271125IPR017930Myb domain
SMARTSM007174.9E-1575123IPR001005SANT/Myb domain
PfamPF002491.6E-1576119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-2478124IPR009057Homeodomain-like
CDDcd001673.86E-1280119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MSTNSKSSNN TSSSEDDANE LRRGPWTVEE DTLLIHYITR HGEGRWNLLA KRSGLRRTGK  60
SCRLRWLNYL KPDVKRGNLT PEEQILILDL HSKWGNRWSK IAQYLPGRTD NEIKNYWRTR  120
VQKQAKHLKI DTESAAFQEI IRRFWMPRLL QKIEHSSCSP MPIVQSSSAV VPMPSDTTSG  180
SQQYYGSSST HLLSGHCSLN ISGLTVNEQS SDSSESMNFC QNSQFHQYPS SPFQPPNLVH  240
NNNGYNAFLE GCSYGGGDNN GYDNNMSVSN SNQSTVLEGG LANPVESFHV AGSNWPDNDF  300
FAGVWNMDDQ LWQYRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-26201241104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010094742.11e-132transcription factor MYB62
TrEMBLA0A2P5APC71e-154A0A2P5APC7_PARAD; MYB transcription factor
STRINGXP_010094742.11e-131(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.16e-76myb domain protein 116