PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G035952.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 254aa    MW: 28340.1 Da    PI: 10.6871
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G035952.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.2e-16201247148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +g WT++Ed  l ++v ++G + W++Ia+++  gR +kqc++rw+++l
  HL.SW.v1.0.G035952.1 201 KGQWTPQEDRVLMQLVGRYGIRKWSKIAKMLS-GRVGKQCRERWHNHL 247
                           799*****************************.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-23195252IPR009057Homeodomain-like
SuperFamilySSF466892.97E-18196252IPR009057Homeodomain-like
PROSITE profilePS5129427.747196251IPR017930Myb domain
SMARTSM007172.1E-13200249IPR001005SANT/Myb domain
PfamPF002499.5E-15201247IPR001005SANT/Myb domain
CDDcd001672.23E-14204247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MQLDSRFTMR FNNFAFLTNP LPENPLNNGF APTLELSSYH HHFDQHHVDN HDEAPLNGSS  60
QHGLGHIMTK SASSTPFFGV STPNVSFETA YSKSSLPFSS QNQNGILHGL AQNGITTTEP  120
QTYVYAAPEP PVTLNFRDLG SAKNMADNHL SCITTPDSVP GQKGLQKRSS ASFVGHGLKK  180
KKRTHMNRKA GKVQKKSNVI KGQWTPQEDR VLMQLVGRYG IRKWSKIAKM LSGRVGKQCR  240
ERWHNHLRPD IRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gvd_A3e-18199250152MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177195LKKKKRTHMNRKAGKVQKK
2180184KKRTH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108794.11e-56transcription factor MYB115
TrEMBLA0A2P5EFA76e-80A0A2P5EFA7_TREOI; Octamer-binding transcription factor
STRINGXP_010108794.15e-56(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.11e-29myb domain protein 118