PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G035953.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 243aa    MW: 27465.9 Da    PI: 4.165
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G035953.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-16547145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                          ++ W+++Ed  l++a+k+lG++ W+ Ia+++  gR+++ +k++w+
  HL.SW.v1.0.G035953.1  5 KDTWSEDEDIVLIEAHKELGNR-WAEIAKRLD-GRSENTIKNHWN 47
                          679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.276154IPR017930Myb domain
SuperFamilySSF466892.3E-14355IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-17352IPR009057Homeodomain-like
SMARTSM007172.5E-14452IPR001005SANT/Myb domain
PfamPF002491.4E-14547IPR001005SANT/Myb domain
CDDcd001679.45E-12750No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MCLSKDTWSE DEDIVLIEAH KELGNRWAEI AKRLDGRSEN TIKNHWNATK RRQSSKKKSR  60
DPNNKGSTLL QDYIRSLEPS DENSTTSTPE NNNNNGVAVV VGERPEFYPE DHEEIEHYEH  120
ENYDPDNYGY ESNAAVVLMA AASADQSSDM SEDSTDEAWT DNFYNVDLGA MDANATNDKN  180
LYSESYGFRS LLEEMSYGSV IMNDENGVDF QMRSEIESLM RGPGEAVKKE MDLMEMLCLG  240
KL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1idy_A5e-17153153MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A5e-17153153MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108794.12e-58transcription factor MYB115
TrEMBLA0A2P5BUN77e-80A0A2P5BUN7_PARAD; Octamer-binding transcription factor
STRINGXP_010108794.16e-58(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-22myb domain protein 98