PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G035984.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 428aa    MW: 48370.6 Da    PI: 4.5268
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G035984.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.71.8e-101659148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+W++ Ed++l+  ++++G ++W++ ++         +c++rw +yl
  HL.SW.v1.0.G035984.1 16 RGPWSPAEDLRLISFIQKYGHENWRALPKQAD----VGSCRLRWINYL 59
                          89************************999999....68********97 PP
2Myb_DNA-binding49.31.1e-1565110148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg+++ eE+e + ++++ lG++ W++Ia++++ gRt++++k+ w+++l
  HL.SW.v1.0.G035984.1  65 RGNFSIEEEEAIMKLHETLGNK-WSKIASHFP-GRTDNEIKNVWNTHL 110
                           89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-17762IPR009057Homeodomain-like
PROSITE profilePS5129410.5041159IPR017930Myb domain
SuperFamilySSF466891.8E-2514106IPR009057Homeodomain-like
SMARTSM007174.7E-81561IPR001005SANT/Myb domain
PfamPF002495.4E-91659IPR001005SANT/Myb domain
CDDcd001673.02E-61859No hitNo description
PROSITE profilePS5129425.04360114IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2663114IPR009057Homeodomain-like
SMARTSM007173.6E-1364112IPR001005SANT/Myb domain
PfamPF002492.7E-1465110IPR001005SANT/Myb domain
CDDcd001672.23E-967110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MGRGRAPCCD KSQVKRGPWS PAEDLRLISF IQKYGHENWR ALPKQADVGS CRLRWINYLR  60
PDVKRGNFSI EEEEAIMKLH ETLGNKWSKI ASHFPGRTDN EIKNVWNTHL KKRLSSKDDD  120
QSNPNNKGDD QSKEEYSSIT SSSSSLSSTT TLSSGNKRSS SVQQQQQPEH GSQFDLESPP  180
KRARIKEDEK GSVDDQKEIQ DKIKQDDDDR KKNEPNEQVL LVMTRSTTTS SASSYDSNVS  240
NNSDQVGASK LDHQGEVDMD LLFDFKGAYY DDDVSGLLLQ EEVNKPEVDY YYEPIIPLET  300
DYDFWNMVDS LGTTIQPNNN NNEVVQLVQG SEAAAAATTC DHDHGQSSSF GVLDDQFYGS  360
DEINETKKWF RYLENELGLE AGGVSTTEND NQNLAIQDVR QEVDIFQYHH HDVIEAKSDY  420
PFNLSQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-24161144105C-Myb DNA-Binding Domain
1msf_C7e-24161144105C-Myb DNA-Binding Domain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5CB641e-131A0A2P5CB64_TREOI; MYB transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100293042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.15e-65myb domain protein 58