PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G036102.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 223aa    MW: 25361.1 Da    PI: 4.6194
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G036102.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-153489345
                          SS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwq 45
                          +WT+eEd +lv++++ +G g               W++Ia+ ++ gRt++q+k++w+
  HL.SW.v1.0.G036102.1 34 SWTEEEDSILVNYINTHGEGrwnflafdsdsimhGWSKIAEWLP-GRTDNQIKNYWR 89
                          7*******************************************.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.752796IPR017930Myb domain
SMARTSM007177.1E-113194IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-173197IPR009057Homeodomain-like
SuperFamilySSF466891.9E-123288IPR009057Homeodomain-like
CDDcd001672.43E-123489No hitNo description
PfamPF002491.4E-123490IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MENTSKEVRR GGSATHDEDD YCREEMSGIR NGRSWTEEED SILVNYINTH GEGRWNFLAF  60
DSDSIMHGWS KIAEWLPGRT DNQIKNYWRS RVQKQAKLLK CEVNSQQFRD IMRNVLIPRL  120
AKQIQLTQTT TPQSPDPTIT RDIDPTTPLT MPAAAFASAS ASLNDAVLVQ PNHYYDDPAS  180
LMLEWPLLQQ NDHVATTSTT ADPFGDYLTY DDIANILWNH DI*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024189443.19e-33transcription factor MYB108
STRINGXP_010094412.16e-32(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.16e-31myb domain protein 2