PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G036184.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Trihelix

Protein Properties

Length: 250aa MW: 27152.4 Da PI: 5.2762

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G036184.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.5	3.2e-27	44	138	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 rWt+qe+l+Li+++r e+++rr + + +p+W++vs+++r +g++r+p+qC+++w+nl+++ykkike+e +r+++s s ++ HL.SW.v1.0.G036184.1 44 RWTRQEILVLIQGKRVAESKVRRIRtagaafgsgQVEPKWASVSSYCRMHGVNRGPVQCRKRWSNLAGDYKKIKEWELQRKDGSDSFWA 132 8*******************844445566666********************************************999999999 PP trihelix 81 yfdqle 86 + ++l+ HL.SW.v1.0.G036184.1 133 MRNDLR 138 999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.6E-12	44	134	No hit	No description
PROSITE profile	PS50090	6.4	44	110	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.3E-5	44	109	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MALELSLPTN PVDTEADGVT NGVDARPSST DGGDDGRRAP RLPRWTRQEI LVLIQGKRVA 60 ESKVRRIRTA GAAFGSGQVE PKWASVSSYC RMHGVNRGPV QCRKRWSNLA GDYKKIKEWE 120 LQRKDGSDSF WAMRNDLRRE RKLPGFFDKE VYDILDAGSG GGVGQQATPV VAPPPAEEME 180 KDATAEEPEE NTVMFDSRRG ATAEDGMFSD FEQEDSVRSP VKEAAAATAT KEAPPAASMG 240 IPAVPISCK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015895940.1	1e-131	trihelix transcription factor ASR3
Swissprot	Q8VZ20	1e-75	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A2P5F1X8	1e-127	A0A2P5F1X8_TREOI; Homeodomain-like
STRING	XP_010100033.1	1e-106	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2165	33	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	8e-77	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]