PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G036230.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

SBP

Protein Properties

Length: 166aa MW: 18237.8 Da PI: 8.2976

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G036230.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.4	3.2e-41	92	165	2	75
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 Cq+++C+adl+eak+yhrrhk+Ce+h+ka+vv v+gl+qrfCqqCsrfh lsefD++krsCrrrLa+hnerrrk HL.SW.v1.0.G036230.1 92 CQADNCNADLTEAKHYHRRHKICEFHAKASVVSVAGLQQRFCQQCSRFHGLSEFDDTKRSCRRRLAGHNERRRK 165 *************************************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.2E-35	85	153	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.197	89	166	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.67E-38	90	165	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.8E-32	92	165	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MEPNRAQGKR SFKYKMGEEM EEEEEEDEDD DVSCLGFGSG SGSGDEMMRK KGPAAMSSSN 60 SSSTSSSSGA AATATIRRSG SSVGGSTRPP SCQADNCNAD LTEAKHYHRR HKICEFHAKA 120 SVVSVAGLQQ RFCQQCSRFH GLSEFDDTKR SCRRRLAGHN ERRRKX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-37	85	165	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010108163.1	4e-52	squamosa promoter-binding protein 1
Swissprot	Q38741	4e-40	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A2P5CK13	3e-59	A0A2P5CK13_TREOI; SBP-box transcription factor
STRING	XP_010108163.1	2e-51	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF535	34	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	1e-37	squamosa promoter binding protein-like 3

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]