PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G036532.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 994aa    MW: 111644 Da    PI: 4.9382
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G036532.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.11e-13853248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  HL.SW.v1.0.G036532.1  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                          78*****************************.************986 PP
2Myb_DNA-binding32.81.6e-1060103248
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  HL.SW.v1.0.G036532.1  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                           68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.7E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF139214.6E-131070No hitNo description
CDDcd001678.78E-121053No hitNo description
SuperFamilySSF466898.27E-2133106IPR009057Homeodomain-like
CDDcd116592.17E-3055106No hitNo description
Gene3DG3DSA:1.10.10.603.2E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118316.2E-54407658IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 994 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD DNYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDTRQR KRKRKGIDYN AEIPFEKKPP PGFYDVTEED RTVEQPSFPT  240
TIEELEGKRR IDVEAQMRKQ DIAKNKIAER QDAPSAILQA NKLNDPEAVR KRSKLMLPAP  300
QISDHELEEI AKIGYASDLL AGGEDLTDGN GATRALLANY GQTPRQGVTP LRTPQRTPAG  360
KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP KKKEIQTPNP MLTPSATPGA  420
AGLTPRIGMT PTRDGYSFGM TPKGTPIRDE LRINEDMELH ESTKLELRRQ ADMRRNLISG  480
FSNLSQPKNE YQLVVQPGPE DNEEPEQNIE EDMSDRLARE KAAEDARLQA LLRKRSKVLQ  540
RELPRPPAAS LELIKNSLMR ADGDKSSFVP PTVIEQADEM IRKELLTLLE HDNAKYPLNE  600
KVNKEKKKGA RRSANGSAAP VPEIEDFEED ELREADNFIK EEAGYLRVAM GHESESLDEF  660
VDAHNTCLND LMYFPTRNAY GLSSVAGNME KLAALQNEYE NVRKNVEDDV KKAANLEKKT  720
KILTDGYELR AKKSLWPQIE ETFKQMDTAA KELECFQALQ KQEQLAASHR INNIWEEVKK  780
QKELERTLQK RYGDLLEELE RTRHQMDEFR VQAQKQEEIA QKQEEIAANN CETELAESAV  840
NQSVEQSTED SGLTVASDEV GSAMSIDPSR DENASQQTES IQEHAQSPAA HDKIPPAADG  900
EHLTVVEGNG SNSQLSIPNG MGDGLSEVVA EEKKVAQNSV DEVANDDMTT DEITKDVKNQ  960
QNATIQESSI PETASDGGFV GDAKEVSGNG REM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.028003796Cell division cycle 5-like protein
5xjc_L0.028003796Cell division cycle 5-like protein
5yzg_L0.028003796Cell division cycle 5-like protein
5z56_L0.028003796Cell division cycle 5-like protein
5z57_L0.028003796Cell division cycle 5-like protein
5z58_L0.028003796Cell division cycle 5-like protein
6ff4_L0.028003796Cell division cycle 5-like protein
6ff7_L0.028003796Cell division cycle 5-like protein
6icz_L0.028003796Cell division cycle 5-like protein
6id0_L0.028003796Cell division cycle 5-like protein
6id1_L0.028003796Cell division cycle 5-like protein
6qdv_O0.028003796Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDTRQRKRKRK
2199204RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102234.10.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A2P5C0D40.0A0A2P5C0D4_TREOI; MYB transcription factor
STRINGXP_010102234.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40723354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]