PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G036597.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 448aa    MW: 47925.4 Da    PI: 5.1264
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G036597.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-1777122147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +g+W++eEd  l ++v ++G ++W++Iar ++ gR++k+c++rw + 
  HL.SW.v1.0.G036597.1  77 KGPWSPEEDAVLSRLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 122
                           79******************************.***********985 PP
2Myb_DNA-binding57.72.8e-18129173147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r+++T+eEd l+v a++ +G++ W++Iar ++ gRt++ +k++w++ 
  HL.SW.v1.0.G036597.1 129 RKPFTEEEDRLIVTAHASHGNK-WAAIARLLP-GRTDNAIKNHWNST 173
                           789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.40672123IPR017930Myb domain
SuperFamilySSF466893.27E-3174170IPR009057Homeodomain-like
SMARTSM007174.0E-1576125IPR001005SANT/Myb domain
PfamPF002491.4E-1677122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2678130IPR009057Homeodomain-like
CDDcd001671.93E-1479121No hitNo description
PROSITE profilePS5129426.329124178IPR017930Myb domain
SMARTSM007171.2E-17128176IPR001005SANT/Myb domain
PfamPF002494.8E-16129173IPR001005SANT/Myb domain
CDDcd001672.75E-13131174No hitNo description
Gene3DG3DSA:1.10.10.604.0E-24131177IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MTVPNDAVSN DDDRTDGLEL GGGGGGGGGG GGETELLGLS SGVGGGGGGG GGETELLGLG  60
LSSGVGVGGG GGDGRVKGPW SPEEDAVLSR LVSKFGARNW SLIARGIPGR SGKSCRLRWC  120
NQLDPCVKRK PFTEEEDRLI VTAHASHGNK WAAIARLLPG RTDNAIKNHW NSTLKRKYPE  180
FGSFKPAPEE MVIDGSLDKR RASSEETLSV EIMNPLKNLE GRDISVDNRP IQYENRAQVN  240
EGCIFEADYH NLVSEAPHPI ISRPVARISA FSVYNPSSGL TRSSVFPRTL PADGTLSQGS  300
KSDFGSCKLF GEVFSERMAP LQCGHGCCEN SNQSQTRRSL LGPEFLDYEE VPSFPSHELI  360
SIVTELNNIA WMRSDLENSR ARMSDQTAIL DIFQGSTSTT QVGATEQNKA DHLRYEEGRN  420
KLMGMMTDAL SSQMQSFAMP AEVEGLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-41761776107B-MYB
1mse_C3e-41761773104C-Myb DNA-Binding Domain
1msf_C3e-41761773104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106095.10.0transcription factor MYB25
TrEMBLA0A2P5EPU60.0A0A2P5EPU6_TREOI; GAMYB transcription factor
STRINGXP_010106095.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.19e-93myb domain protein 109