PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G036821.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 250aa    MW: 28058.6 Da    PI: 8.1316
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G036821.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.62.6e-191510052128
                   NAM  52 kaeekewyfFskrdkkyatgkrknra........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           k++ ++++fF+k+ ++yatg+rk+r+        +++ +W++tgk+k+v++ +g ++g kk++v+y  +++ +k+ kt+W mh+++l
  HL.SW.v1.0.G036821.1  15 KKDGSSIHFFHKTINAYATGQRKRRKvqcqqgstAEHVRWHKTGKTKPVIE-NGVQKGWKKIMVLYksTKKGSKPDKTNWKMHQFHL 100
                           4566789******************86888887666899************.999***********4434667778*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.6141119IPR003441NAC domain
SuperFamilySSF1019414.32E-2114119IPR003441NAC domain
PfamPF023654.1E-621100IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MKKRGEGREV CCRAKKDGSS IHFFHKTINA YATGQRKRRK VQCQQGSTAE HVRWHKTGKT  60
KPVIENGVQK GWKKIMVLYK STKKGSKPDK TNWKMHQFHL GTGEEENEGQ YVVSKIFYKQ  120
SENSDNSPLI EESDMKVAHE ASPKTPISNP PIPPRHGKSI MNDDIADTTL LQSAAKEGDP  180
IGESSLLPQT DILGEDNMDF PWLAGESQAD EYYDPNCIDN SLLCKETFDS SSRLTYIPNT  240
DLTGKSIPPC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018840185.12e-90PREDICTED: NAC domain-containing protein 8-like
TrEMBLA0A2P5BFR01e-114A0A2P5BFR0_TREOI; NAC domain containing protein
STRINGXP_009370397.15e-86(Pyrus x bretschneideri)
STRINGXP_009371759.13e-86(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75723047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.12e-41NAC domain containing protein 44