PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G036846.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Dof
Protein Properties Length: 394aa    MW: 42027 Da    PI: 9.1818
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G036846.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.57.8e-4042102262
                zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                           +e++lkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvPvGgg+rknkk++
  HL.SW.v1.0.G036846.1  42 PEHSLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPVGGGCRKNKKVK 102
                           57889*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-272798IPR003851Zinc finger, Dof-type
PfamPF027014.6E-3344100IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.53446100IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104884IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MMSADPTPAA ASSKSAPSKD EIHGGSAGSG NRKNSNAARP APEHSLKCPR CDSPNTKFCY  60
YNNYSLTQPR HFCKTCRRYW TKGGALRNVP VGGGCRKNKK VKSSSRLSGS GADSKDYSSS  120
SSTSDFGLKF FHGISPAMDF QLGGLSFPRL HHNPSAGIYN SNSNTNNSIN NQLSSFGEVV  180
VSPSSTSFDN NNLSGASNPL AGTFSYPLSL APGGFSAPAV HSSLASSIES LSSINQDLHW  240
KLQQQRLAAM LFGGDQPQKE SLVSPSTAVN NNNNNNSLGN SQHLHQQQLE KPQSSSVPLL  300
FHNLEISRQD QPPQRKDQLV ISSGDSTTAT GMEWFFGNSN YAQPPQPPLP QPFQVSVTPS  360
NSGSTNGHDQ NGSTWISSNG NQAWSTSDHF TAI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022740996.11e-101dof zinc finger protein DOF5.7-like
TrEMBLA0A2P5FGY51e-152A0A2P5FGY5_TREOI; Zinc finger, Dof-type
STRINGEOX918923e-99(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38543460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.13e-44Dof family protein