PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G036903.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 273aa    MW: 30670.4 Da    PI: 6.3793
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G036903.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.91.9e-21118168155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           ++++GVr+++ +grW+AeIrdp+    r kr++lg+f+taeeAa  +++a++kl+g
  HL.SW.v1.0.G036903.1 118 KKFRGVRRRP-WGRWAAEIRDPT----RrKRVWLGTFDTAEEAATVYDQAALKLKG 168
                           59********.**********84....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.8E-6913272IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000183.04E-33118178No hitNo description
PROSITE profilePS5103224.856119176IPR001471AP2/ERF domain
PfamPF008472.8E-14119168IPR001471AP2/ERF domain
SMARTSM003801.0E-37119182IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-22119176IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.3E-31119177IPR001471AP2/ERF domain
PRINTSPR003671.9E-10120131IPR001471AP2/ERF domain
PRINTSPR003671.9E-10142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MVDHHCYNNQ SFLDPSVKFT EHKITTRKLF HQDPKPKPTM NPLRQKIVRI IITDADATDS  60
SSDEEDSIAV QRRVKRHVRE ISLQQRSSPP PPSPLITKQE RAPKRVIKSP ESDSVRRKKF  120
RGVRRRPWGR WAAEIRDPTR RKRVWLGTFD TAEEAATVYD QAALKLKGAN AVTNFPNVAT  180
SESADAVTGS DESSSPEDSS SSEGAVAVAS SPTSVLRYEE LTPFEDFGFF GPENYGFDFC  240
EPLQLPDIML PRNSIGLAEV EFSEFDLMDV VF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-211191771473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115125RRKKFRGVRRR
2123142RRRPWGRWAAEIRDPTRRKR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874690.15e-86pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046825e-56PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A2P5DI031e-106A0A2P5DI03_PARAD; AP2/ERF transcription factor
STRINGXP_008240070.11e-78(Prunus mume)
STRINGXP_010094437.19e-79(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-25cytokinin response factor 4