PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G037058.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Dof
Protein Properties Length: 262aa    MW: 28477.8 Da    PI: 8.4702
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G037058.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.31.9e-392282262
                zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                          ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkk s
  HL.SW.v1.0.G037058.1 22 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKKPS 82
                          6899******************************************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-252176IPR003851Zinc finger, Dof-type
PfamPF027011.2E-332480IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0962680IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102864IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGSNNNNNNN DDNNGDQKRS RPQEQLNCPR CNSTNTKFCY YNNYSLTQPR YFCKTCRRYW  60
TEGGTLRNVP VGGGSRKNKK PSTTTATTTS APSNINTILS PQNLMLSYNS VQGGQDLNLG  120
FQSAATPAAK AEDDSRFGSD LHHHHPSSSG VNGSTRQLLM YPSGFPFQDE FKPSSLGGFS  180
SSNVDHGLGS RYNSPGHDYN RVVHQVQDHH DNNGGTILFP FGDLKQAVSN NGTEVIHDHQ  240
TKGQGNPTGY WTGLLGGGGS W*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1368737e-53BT136873.1 Lotus japonicus clone JCVI-FLLj-14C11 unknown mRNA.
GenBankBT1443337e-53BT144333.1 Lotus japonicus clone JCVI-FLLj-13E12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306645.15e-63PREDICTED: dof zinc finger protein DOF3.7
TrEMBLA0A2P5AR478e-96A0A2P5AR47_TREOI; Zinc finger transcription factor
STRINGXP_004306645.12e-62(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.39e-41Dof family protein